View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_high_19 (Length: 326)
Name: NF13836_high_19
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 69 - 311
Target Start/End: Complemental strand, 46342284 - 46342042
Alignment:
| Q |
69 |
ctggatttcctgagcaagctccatcaatattacatttgatccaattgaaaattgggggctgccagatgatttacttaacaacatgagcattaggtcttct |
168 |
Q |
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| T |
46342284 |
ctggatttcctgagcaagctccatcaatattacatttgatccaattaaaaaccgggggctgccagatgatttacttaataacatgagcattaggtcctct |
46342185 |
T |
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| Q |
169 |
cattaaaactttgaagcttttcagaatcatgaaatcagtgattgaagaattacattgacttttggttaagttaccagataaagagtatacgatataatga |
268 |
Q |
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| T |
46342184 |
cattaaaactttgaagcttttcagaatcatgaaatcagtgattgaaggattacattgacttttggttaagttacccgataaagagtagacgatgtaataa |
46342085 |
T |
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| Q |
269 |
ggttgatggctgatttagggtgaatgactttatctgaaaatct |
311 |
Q |
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| T |
46342084 |
ggttgatggctgatttagggtgaatgactttatctgaaaatct |
46342042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 45740188 - 45740106
Alignment:
| Q |
36 |
tatttctgaaaattccaccacatgaagcttgacctggatttcctgagcaagctccatcaatattacatttgatccaattgaaa |
118 |
Q |
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| T |
45740188 |
tatttctaaaaatgccagcacaagcagcttgacctggatttcctaagactgcaccatctgtattacatttgatccagttgaaa |
45740106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 45404931 - 45404885
Alignment:
| Q |
86 |
gctccatcaatattacatttgatccaattgaaaattgggggctgcca |
132 |
Q |
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| T |
45404931 |
gctccatcaatattacacttgatccaaatgaacattgggggctgcca |
45404885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 11156199 - 11156154
Alignment:
| Q |
89 |
ccatcaatattacatttgatccaattgaaaattgggggctgccaga |
134 |
Q |
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| T |
11156199 |
ccatcagtattacatttgatccagttaaaaattggaggctgccaga |
11156154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 24540863 - 24540835
Alignment:
| Q |
32 |
tcactatttctgaaaattccaccacatga |
60 |
Q |
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| T |
24540863 |
tcactatttctgaaaattccaccacatga |
24540835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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