View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13836_high_2 (Length: 710)
Name: NF13836_high_2
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 13 - 679
Target Start/End: Original strand, 18044524 - 18045195
Alignment:
| Q |
13 |
atcatggatggggcttgggtgggaatacccgaatccgtcggagacgggatgagatttgatttctcatctccgcgggatgggaatacccaaatatttttca |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18044524 |
atcatggatggggattgggtgggaatacccgaatccgtcggggacgggatgagatttgatttctcatccccgcgggatgggaatacccaaatatttttca |
18044623 |
T |
|
| Q |
113 |
actgaaagcagtgctaagatggttcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttggtgtcttatactaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| | |
|
|
| T |
18044624 |
actgaaagcagtgctaagatggttcttgacaacattctcattcaagagttgcaaaacaatgttgtgtgcagaacctacacatcttggtgtgttatactga |
18044723 |
T |
|
| Q |
213 |
ctaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18044724 |
ctaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaatttac |
18044823 |
T |
|
| Q |
313 |
gagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattc-----aatcaacacttgttcgcttgcttccccgttgatttcccag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18044824 |
gagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatataatcaacacttgttcgcttgcttccccgttgatttcccag |
18044923 |
T |
|
| Q |
408 |
aatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttcca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18044924 |
aatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttcca |
18045023 |
T |
|
| Q |
508 |
ctgctaattgtaaatccttctcggtattcttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaa |
607 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045024 |
ctgctaattgtaaatccttctcagtattcttgtcaatgttaatgctccgtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaa |
18045123 |
T |
|
| Q |
608 |
tcccataacttttaccacgtctcctagcctatatcggtataaacctaaaattatataaccaagttagttaat |
679 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045124 |
tcccataacttttaccacgtcccctagcctatatcggtataaacctaaaattatataaccaagttagttaat |
18045195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 136 - 659
Target Start/End: Complemental strand, 48369989 - 48369466
Alignment:
| Q |
136 |
tcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttggtgtcttatactaactaacagatgttcctaatcccaa |
235 |
Q |
| |
|
||||||||||||| ||| |||| | || ||| |||||||||||| || |||||||||||||||||| ||||||| |||||||| |||||||||||| | |
|
|
| T |
48369989 |
tcttgacaacattttcactcaatatttgcaacacaatgttgtgtgtaggacctacacatcttggtgttttatactgactaacagctgttcctaatccaag |
48369890 |
T |
|
| Q |
236 |
gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatcg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
48369889 |
gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgtagcctgcatcg |
48369790 |
T |
|
| Q |
336 |
atgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctctttag |
435 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||| ||| |||||||| | |
|
|
| T |
48369789 |
acaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccctggctctttgg |
48369690 |
T |
|
| Q |
436 |
ataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctcggtatt |
535 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||||||| | || ||||||||| ||||| |||||||| ||||| || || |
|
|
| T |
48369689 |
ataaatcaacatggcttgtgaactcaacaacttccaatttctcttctactaataattttgccgctgcttccacggctaactgtaaatctttctctgtgtt |
48369590 |
T |
|
| Q |
536 |
cttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagc |
635 |
Q |
| |
|
|||||||||||| ||| | || | || ||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
48369589 |
cttgtcaatgtttatgtttagcagaagactactcctacgaataaactttagttctggagttgagttatggaatcccataacttttaccacatcccctagc |
48369490 |
T |
|
| Q |
636 |
ctatatcggtataaacctaaaatt |
659 |
Q |
| |
|
||||| | |||||||||| ||||| |
|
|
| T |
48369489 |
ctatacctgtataaacctgaaatt |
48369466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 23533989 - 23534043
Alignment:
| Q |
37 |
atacccgaatccgtcggagacggg-atgagatttgatttctcatctccgcgggat |
90 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||||||||| |||| |||| |
|
|
| T |
23533989 |
atacccgaacccgtcggagacggggatgagattcgatttctcatccccgctggat |
23534043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 99 - 680
Target Start/End: Original strand, 13978858 - 13979420
Alignment:
| Q |
99 |
ccaaatatttttcaactgaaagcagtgctaagatggttcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttg |
198 |
Q |
| |
|
||||||||| ||||| |||||||||| || | ||| |||||||||||||| |||||||||| || ||| |||||||| ||| | ||||| | |||||| |
|
|
| T |
13978858 |
ccaaatattattcaattgaaagcagtactcaaatgtttcttgacaacattttcattcaagatttgcaacacaatgttctgtgtaagacctaaatatcttg |
13978957 |
T |
|
| Q |
199 |
gtgtcttatactaactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgat |
298 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
13978958 |
ctgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggaatgttcctttcccaacaactcggagttctaaggccccaat |
13979057 |
T |
|
| Q |
299 |
agtgttgaacttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttg |
398 |
Q |
| |
|
||||||| ||| || ||| | |||| || ||| ||||||||||||||||||| |||||||||| | |||||| || ||| |||||||| || | |
|
|
| T |
13979058 |
agtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttcaccacta |
13979157 |
T |
|
| Q |
399 |
atttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacg |
498 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
13979158 |
atttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaattcctcttctgctaataatttag--- |
13979254 |
T |
|
| Q |
499 |
atgcttccactgctaattgtaaatccttctcggtattcttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttga |
598 |
Q |
| |
|
|| |||||| ||||| || ||||||| ||||||| |||||| |||| ||||||||| ||||| ||||||||||| | ||||| |
|
|
| T |
13979255 |
-------ca---------gtaaatttttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcagtgttga |
13979338 |
T |
|
| Q |
599 |
gttatggaatcccataacttttaccacgtctcctagcctatatcggtataaacctaaaattatataaccaagttagttaata |
680 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||| |||||||| ||| ||||||||||||| ||| |||||||| |
|
|
| T |
13979339 |
gttactgaatcccataatatttaccacatctcctagcctataccggtataaccctgaaattatataaccgagtaagttaata |
13979420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 237 - 649
Target Start/End: Original strand, 10241557 - 10241969
Alignment:
| Q |
237 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatcga |
336 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| ||||||||| | |||| | ||| |||| || | ||||||| || || ||||| | |
|
|
| T |
10241557 |
taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaacatagccagcatcaa |
10241656 |
T |
|
| Q |
337 |
tgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctctttaga |
436 |
Q |
| |
|
||||||||||||||||| | ||||||||| | ||||| || |||||||| || |||||||||| || || ||||| || || || ||||| || |
|
|
| T |
10241657 |
caaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttgga |
10241756 |
T |
|
| Q |
437 |
taaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctcggtattc |
536 |
Q |
| |
|
|||||| | | ||| || | |||| ||||||| ||||||||| ||||| || | || | || |||||||| |||||||||||| ||||| || ||| |
|
|
| T |
10241757 |
taaatcaatgtagctagtatagtcaatcacttccattttctcttcagctaacaacatggaagctgtttccactgataattgtaaatcattctcagtgttc |
10241856 |
T |
|
| Q |
537 |
ttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagcc |
636 |
Q |
| |
|
|| |||||||| || | || | || | ||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||| || |||| || |
|
|
| T |
10241857 |
ttatcaatgttgatagtaagcataaggttgctcctacgaagaaacttgatttttggagttgagttatggaatcccataacctttaccacatcccctaacc |
10241956 |
T |
|
| Q |
637 |
tatatcggtataa |
649 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
10241957 |
tatatctgtataa |
10241969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 640
Target Start/End: Original strand, 10283519 - 10283591
Alignment:
| Q |
568 |
tcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagcctata |
640 |
Q |
| |
|
||||||||| ||| ||| || ||||||||||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
10283519 |
tcctgcgaagaaacctgatttctggagttgagttatggaatcccataaccttcaccacatctccgagcctata |
10283591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 10263528 - 10263577
Alignment:
| Q |
237 |
taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
286 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| ||||||||| |
|
|
| T |
10263528 |
taatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttc |
10263577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 10271680 - 10271749
Alignment:
| Q |
217 |
cagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc |
286 |
Q |
| |
|
|||||| ||||||||| | ||||| ||||||||||| || ||||||||||| | ||||| ||||||||| |
|
|
| T |
10271680 |
cagatgctcctaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttc |
10271749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8020315 - 8020270
Alignment:
| Q |
40 |
cccgaatccgtcggagacggg-atgagatttgatttctcatctccg |
84 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8020315 |
cccgaacccgtcggagacggggatgagatttgatttctcatctccg |
8020270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 8844165 - 8844218
Alignment:
| Q |
33 |
gggaatacccgaatccgtcggagacggg-atgagatttgatttctcatctccgc |
85 |
Q |
| |
|
||||||||||||| ||||| | |||||| |||||||||||||||||||| |||| |
|
|
| T |
8844165 |
gggaatacccgaacccgtcagggacggggatgagatttgatttctcatccccgc |
8844218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 8857129 - 8857182
Alignment:
| Q |
33 |
gggaatacccgaatccgtcggagacggg-atgagatttgatttctcatctccgc |
85 |
Q |
| |
|
||||||||||||| ||||| | |||||| |||||||||||||||||||| |||| |
|
|
| T |
8857129 |
gggaatacccgaacccgtcagggacggggatgagatttgatttctcatccccgc |
8857182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 47239702 - 47239755
Alignment:
| Q |
28 |
tgggtgggaatacccgaatccgtcggagac-gggatgagatttgatttctcatc |
80 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
47239702 |
tgggtgggaatacccaaatccgtcggggacggggatgagattcaatttctcatc |
47239755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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