View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_high_22 (Length: 287)
Name: NF13836_high_22
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 83 - 287
Target Start/End: Original strand, 5814070 - 5814274
Alignment:
| Q |
83 |
ttagagagttaaagttggaatatgttctgtttcttatggagttacataaggccaacatatatttgacagtggctttaggagctaaccaaagactactctt |
182 |
Q |
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| T |
5814070 |
ttagagagttaaagttggaatatgttctgtttcttatggagttacataaggccaacatatttttgacagtggctttaggagctaaccaaagactactctt |
5814169 |
T |
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| Q |
183 |
ctagaaaagtgatttatataaacaatttgaaatcaaataataaaactaaagtttatgatttgaggtgtctcgtctatcaacaaaatgacaaagaatttga |
282 |
Q |
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| T |
5814170 |
ctagaaaagtgatttatataaacaattcgaaatcaaataataaaactaaagtttatgatttgaggtgtctcgtctatcaacaaaatgacaaagaatttga |
5814269 |
T |
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| Q |
283 |
gatta |
287 |
Q |
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||||| |
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| T |
5814270 |
gatta |
5814274 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 5812988 - 5813062
Alignment:
| Q |
13 |
tgaaatctagcctaagccaaatacaaccaattggaacaaaaagattaagtattggtgttcaagttgttagttaga |
87 |
Q |
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| T |
5812988 |
tgaaatctagcctaatccaaatacaaccaattggaacaaaaagatgaagtattggtgttcaagttgttagttaga |
5813062 |
T |
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