View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13836_high_24 (Length: 275)

Name: NF13836_high_24
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13836_high_24
NF13836_high_24
[»] chr7 (12 HSPs)
chr7 (11-275)||(33305331-33305595)
chr7 (11-275)||(31540801-31541068)
chr7 (17-272)||(31573022-31573280)
chr7 (11-275)||(31532175-31532445)
chr7 (19-258)||(31618066-31618308)
chr7 (16-275)||(31585186-31585451)
chr7 (19-258)||(31604462-31604704)
chr7 (19-254)||(31594857-31595095)
chr7 (19-258)||(31614337-31614579)
chr7 (70-258)||(31439258-31439449)
chr7 (19-254)||(31608057-31608298)
chr7 (19-258)||(31575793-31576038)
[»] chr1 (1 HSPs)
chr1 (19-275)||(52174501-52174760)
[»] scaffold0394 (1 HSPs)
scaffold0394 (19-258)||(1738-1980)
[»] chr4 (2 HSPs)
chr4 (19-258)||(15063554-15063796)
chr4 (73-227)||(29083702-29083859)
[»] scaffold0254 (1 HSPs)
scaffold0254 (217-258)||(1792-1833)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 33305331 - 33305595
Alignment:
Q  11 taatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305331 taatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagct 33305430  T
Q  111 aagtaataaccttaattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305431 aagtaataaccttaattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatca 33305530  T
Q  211 gatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccatatcc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33305531 gatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgggtcagtgccatatcc 33305595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 31541068 - 31540801
Alignment:
Q  11 taatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagct 110  Q
    |||| ||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||||||  ||| |||||||||||||||||||||||||||     
T  31541068 taattctagaaatggttgggggaagaaagaattatgacactggagggtcatgtacttctgaaatgtgttttccagattggatttataaggatcttgagca 31540969  T
Q  111 aagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatcca 207  Q
    |  ||||||||||   |||||||  ||||||||| | |||||||||||||||| ||||| |||||||||| | ||||| |||||||||||||| ||||||    
T  31540968 agctaataaccttgctaattgtttagcaaactcaaaggaagaaaatgatatggtaagaatgattactatggtgagtctatggtgcattcaaacaaatcca 31540869  T
Q  208 tcagatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccatatcc 275  Q
     | |||||||||||||||||||||||  |||||||||| |||||||||||| |||| |||||||||||    
T  31540868 gccgatagaccatcaatgagtaaagtattagaaatgctacaaggaccacttcagtcggtgccatatcc 31540801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 31573022 - 31573280
Alignment:
Q  17 tagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaa 116  Q
    |||||||||| || ||||||||||| |||||||| |||||||| ||||| || |||||||||||| |||||||||||||||| |||||||||||||||||    
T  31573022 tagaaatgattggtggaagaaagaactatgacacaggagggtcgtgtacttctgaaatgtactttccagattggatttataatgatcttgagctaagtaa 31573121  T
Q  117 taacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagat 213  Q
    |||| ||   ||| |||  |||||||| || ||||||| |||||||| ||||||| | |||||| ||||||| ||||||||||||||||| |||| ||||    
T  31573122 taactttgtgaatggtttagcaaactccgaggaagaaactgatatggtaagaaagttaactatggttagtctatggtgcattcaaacgaacccattagat 31573221  T
Q  214 agaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccata 272  Q
    |||||||| |||||||||||  |||||||||| |||||||||||||| |||||||||||    
T  31573222 agaccatcgatgagtaaagtattagaaatgctacaaggaccacttgattcagtgccata 31573280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 31532445 - 31532175
Alignment:
Q  11 taatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagct 110  Q
    |||| ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||| | || |||||||||||||||||||| |     
T  31532445 taattctagaaatgattggaggaagaaagaattatgacactggagggtcatgtacttctgaaatgtactttcctgactggatttataaggatcttgaaca 31532346  T
Q  111 aagtaataa---cctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaat 204  Q
    | |||||||   ||||   |||| ||  | ||| ||||| ||||||||||||||||  ||||||||||||||| | ||| | |||||||||||||| ||     
T  31532345 aggtaataataaccttgtgaattatttagaaaattcagaggaagaaaatgatatggtgagaaagattactatggtgagtttatggtgcattcaaacaaac 31532246  T
Q  205 ccatcagatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccatatcc 275  Q
    ||||| ||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||    
T  31532245 ccatccgatagaccatcaatgagtaaagtaacagaaatgctacaaggaccacttcagtcagtgccatatcc 31532175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 31618308 - 31618066
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    ||||||||||| ||||| ||||| || |||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| | | ||||    
T  31618308 gaaatgatcggaggaaggaagaactacgacacgggagggtcatgtacttctgaaatgtactttccagattggatttataaggatcttgagcaagggaata 31618209  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
      |||   ||||||||  ||| ||| || |||||||||||||||   |||||||||||| || | ||||| |||||||||||||| || |||||||||||    
T  31618208 ctcttttaaattgttcaacaatctcggaggaagaaaatgatatgatcagaaagattactttggtgagtctatggtgcattcaaactaaaccatcagatag 31618109  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    |||| | |||| |||||| ||||||||| | ||||||||||||    
T  31618108 accaccgatgaataaagtaatagaaatgttgcaaggaccactt 31618066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 31585451 - 31585186
Alignment:
Q  16 ctagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagta 115  Q
    |||||||| ||||| || || ||||| || ||||| ||||| |||||| | || |||||||||||| ||||||||||||||||||||||||||| | |||    
T  31585451 ctagaaattatcggaggtaggaagaactacgacacaggaggttcatgtgcttctgaaatgtactttccagattggatttataaggatcttgagcaaggta 31585352  T
Q  116 at-aacctt-----aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatc 209  Q
    || |||||      |||||||   ||| ||| |||||||||||||| ||||  ||||||||||||||| | ||||| |||||||||||||||||||||||    
T  31585351 atgaacctcttttaaattgtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtctatggtgcattcaaacgaatccatc 31585252  T
Q  210 agatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccatatcc 275  Q
     || |||||| | |||| |||||| ||||||||| | ||||||||||||   ||||||||||||||    
T  31585251 ggacagaccaccgatgaataaagtaatagaaatgttgcaaggaccactttcatcagtgccatatcc 31585186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 31604704 - 31604462
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    ||||||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  31604704 gaaatgatcggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagattggatttataaggatcttgagcaaggtaata 31604605  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
      |||   ||||||||  ||  ||| || ||||||||||||||||  |||||||||||| || | ||||| ||| |||||||||| || | |||||||||    
T  31604604 ctcttttaaattgttcgacagtctcggaggaagaaaatgatatggtcagaaagattactttggtgagtctgtggcgcattcaaactaaactatcagatag 31604505  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    |||| | |||| |||||| ||||||||| | ||||||||||||    
T  31604504 accaccgatgaataaagtaatagaaatgttgcaaggaccactt 31604462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 31595095 - 31594857
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    |||||||| || ||||||||||| ||| | || |||||||| ||||| || |||||||||||| |||| |||||||||||||||||||||| | |||||     
T  31595095 gaaatgattggaggaagaaagaactatcaaactggagggtcgtgtacttctgaaatgtactttccagactggatttataaggatcttgagcaaggtaatg 31594996  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
    | |||   |||| ||   |||  ||||| ||||||||||||||||  | ||||||||||||| | || || |||||||||||||| ||||||| ||||||    
T  31594995 atcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatggtgcattcaaacaaatccattagatag 31594896  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggacc 254  Q
    |||| |||||| |||||| || |||||||| ||||||||    
T  31594895 accaccaatgaataaagtaattgaaatgctacaaggacc 31594857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 31614579 - 31614337
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    |||||||| || ||||||||||| |||||||| ||||||||||| || || |||||||||||| ||||||||||||||||| ||||||||| || ||| |    
T  31614579 gaaatgattggaggaagaaagaactatgacactggagggtcatgcacttctgaaatgtactttccagattggatttataagaatcttgagcaaaataaca 31614480  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
      |||   |||||||   ||| |||||| |||||||||||||||   |||||||| ||| || | ||| |||||||||||||||| || |||| ||| ||    
T  31614479 ctcttttaaattgtttgacaatctcagaggaagaaaatgatatgattagaaagatcactttggtgagtgtttggtgcattcaaactaaaccattagacag 31614380  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    |||| | |||| |||||| ||||||||| | ||||||||||||    
T  31614379 accaccgatgaataaagtaatagaaatgttgcaaggaccactt 31614337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 31439258 - 31439449
Alignment:
Q  70 gaaatgtacttttcagattggatttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaa 166  Q
    |||||||||||| | |||||||| |||||||||||||||| | ||||||  |||   |||  ||   ||| ||| ||||||||||||||||| | ||  |    
T  31439258 gaaatgtactttccggattggatatataaggatcttgagcaaggtaatactctttcaaataatttaacaatctccgaagaagaaaatgatatcgtaaaga 31439357  T
Q  167 agattactatgattagtctttggtgcattcaaacgaatccatcagatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    ||||||||||| | ||| | |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  31439358 agattactatggtgagtttatggtgcattcaaacaaatccatcagagagaccatcaatgagtaaagtaatagaaatgctacaaggaccactt 31439449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 31608298 - 31608057
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    |||||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||||||| |||| |||||||||||||||||||||| | ||||      
T  31608298 gaaatgattggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagactggatttataaggatcttgagcaaggtaacc 31608199  T
Q  119 acc-----ttaattgttctg-caaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcaga 212  Q
    |       |||| ||   || ||| ||||   ||||||||||||||||  ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  31608198 atactgttttaaatgggttgacaatctcaacggaagaaaatgatatggttagaaagattactatggtgagtctatggtgcattcaaacgaatccatcaga 31608099  T
Q  213 tagaccatcaatgagtaaagtgatagaaatgcttcaaggacc 254  Q
    ||||||| |||||| |||||| ||||||||| | ||||||||    
T  31608098 tagaccaccaatgaataaagtaatagaaatgttgcaaggacc 31608057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 31576038 - 31575793
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagcta---agta 115  Q
    ||||||||||| ||||| ||||| |||||||| |||||||| |||||  |||||||||| ||| ||||||||||||||||||||||||||| |   | ||    
T  31576038 gaaatgatcggaggaaggaagaactatgacactggagggtcgtgtactccggaaatgtattttccagattggatttataaggatcttgagcaaggtaata 31575939  T
Q  116 ataacc---ttaattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcaga 212  Q
    ||||||   |||| |||    ||   ||||| ||||||||||||||||  |||||||||||| || | ||||| ||||| |||||||| || |||| |||    
T  31575938 ataacctttttaactgtatgacatcgtcagaggaagaaaatgatatggttagaaagattactttggtgagtctatggtgtattcaaaccaaaccattaga 31575839  T
Q  213 tagaccatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
     || ||| | |||| |||||| ||||||||| | ||||||||||||    
T  31575838 caggccaccgatgaataaagtaatagaaatgttgcaaggaccactt 31575793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 52174501 - 52174760
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    |||||||| || ||||||||||| |||||||| |||||||||||||| || |||||||||||| |||| |||||||||||||||||||||| | | ||||    
T  52174501 gaaatgattggaggaagaaagaactatgacactggagggtcatgtacttcagaaatgtactttccagactggatttataaggatcttgagcaaggaaata 52174600  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
      |||   |||||||   ||| |||||| ||||||||||||||||  | |||||||||| || | ||||| ||||||||||||||||| ||||| |||||    
T  52174601 ctctttcaaattgtttgacaatctcagaggaagaaaatgatatggttataaagattactttggtgagtctatggtgcattcaaacgaaaccatcggatag 52174700  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccacttgagtcagtgccatatcc 275  Q
    ||||   |||| |||||| ||||||||| |  |||| ||||||   ||||||||||||||    
T  52174701 accacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcc 52174760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 1980 - 1738
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    ||||||| ||| |||| ||||||||||||||| || |||||   | || | ||||  |||||||| |||||||| | |||||||||||||| | |||||     
T  1980 gaaatgaccggaggaaaaaagaattatgacactggcgggtctcttgcagccgaaacatacttttcggattggatatttaaggatcttgagcaaggtaatt 1881  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
      |||   ||| ||   |||| ||||||||||||||||||||||  ||  |||||||||||| |  || | ||||| |||||||||||||||||||||||    
T  1880 ctcttttaaatagtatggcaatctcagaagaagaaaatgatatgctaaagaagattactatggtgggtttgtggtgtattcaaacgaatccatcagatag 1781  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
     ||||||||||||||||| ||||||||||| ||||| ||||||    
T  1780 tccatcaatgagtaaagtaatagaaatgctgcaagggccactt 1738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 15063554 - 15063796
Alignment:
Q  19 gaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaata 118  Q
    ||||||| ||| |||| ||||||||||||||| || |||||   |||| | |||   |||||| | |||||||| | |||||||||||||| | |||||     
T  15063554 gaaatgaccggaggaaaaaagaattatgacactggcgggtctcatacaaccgaagcatactttccggattggatatttaaggatcttgagcaaggtaatt 15063653  T
Q  119 acctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatag 215  Q
     ||||   ||| |||  |||| ||||||||||||||||||||||  ||  |||||||||||| |   | | ||||| |||||||||||||||||||| ||    
T  15063654 cccttttaaatagtttggcaatctcagaagaagaaaatgatatgctaaagaagattactatggtggctttgtggtgtattcaaacgaatccatcagacag 15063753  T
Q  216 accatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||    
T  15063754 accatcaatgagtaaagtaatagaaatgctgcaagggccactt 15063796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 29083859 - 29083702
Alignment:
Q  73 atgtacttttcagattggatttataaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaaga 169  Q
    ||||||||||   |||||| ||||||||||||| | | ||| ||| |||||   | ||||| |||||| ||| | ||||||||||||||||  ||| |||    
T  29083859 atgtacttttagtattggacttataaggatctttaacaaaggaatgaccttgtgatttgttttgcaaattcaaaggaagaaaatgatatggtgagataga 29083760  T
Q  170 ttactatgattagtctttggtgcattcaaacgaatccatcagatagaccatcaatgag 227  Q
    |||| ||||| ||||| | || ||||||||||| | ||| ||||||||||||||||||    
T  29083759 ttacaatgatgagtctatcgtacattcaaacgatttcatgagatagaccatcaatgag 29083702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 1833 - 1792
Alignment:
Q  217 ccatcaatgagtaaagtgatagaaatgcttcaaggaccactt 258  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||    
T  1833 ccatcaatgagtaaagtaatagaaatgctgcaagggccactt 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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