View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_12 (Length: 412)
Name: NF13836_low_12
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 31167467 - 31167869
Alignment:
| Q |
1 |
tatatgatatatgatttcatttctcagattataatggcaagcctagtgtcacacagatcgtggtggcctcttccattgggttgataattgctgcagcaat |
100 |
Q |
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| T |
31167467 |
tatatgatatatgatttcatttctcagattataatggcaagcctagtgtcacacagatcgtggtggcctcttccattgggttgataattgctgcagcaat |
31167566 |
T |
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| Q |
101 |
gcattatcgcctaaaaaagttaagaggtcgaaagatcatcccacttgtgagattatcaaagactggccaaagtcctaagcttgagagattctctcattat |
200 |
Q |
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| T |
31167567 |
gcattatcgcctaaaaaagttaagaggtcgaaagatcatcccacttgtgagattatcaaagactggccaaagtcctaagcttgagagattctctcattat |
31167666 |
T |
|
| Q |
201 |
gtaggtacgtatttatttttgagatttctttcaaatggatctatgatataatgtatcatctcaaggtgaatcatatatataaatgtatgatactagtgtc |
300 |
Q |
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| T |
31167667 |
gtaggtacgtatttatttttgagatttctttcaaatggatctatgatataatgtatcatctcaaggtgaatcatatatataaatgtatgatactagtgtc |
31167766 |
T |
|
| Q |
301 |
tagaactcgtacacaggagaaaatcgtggtataatatatgttagttaagatttataatttgttgcgtttaattattgagaagcaacaacgtacactttca |
400 |
Q |
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| T |
31167767 |
tagaactcgtacacaggagaaaatcgtggtataatatatgttagttacgatttataatttgttgcgtttaattattgagaagcaacaacgtacacattca |
31167866 |
T |
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| Q |
401 |
tct |
403 |
Q |
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| T |
31167867 |
tct |
31167869 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 40179117 - 40179063
Alignment:
| Q |
336 |
atatgttagttaagatttataatttgttgcgtttaattattgagaagcaacaacg |
390 |
Q |
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| T |
40179117 |
atatgttagttatgatttataatttcttgagtttagttattgagcagcatcaacg |
40179063 |
T |
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