View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_14 (Length: 379)
Name: NF13836_low_14
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 238 - 372
Target Start/End: Original strand, 3823191 - 3823325
Alignment:
| Q |
238 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaacgagttaatggtattttcgccattttagattgttcaatccatacaatttcaacaat |
337 |
Q |
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| T |
3823191 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaatgagttaatggtattttcgccattttagattgttcgatccatacaatttcaacaat |
3823290 |
T |
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| Q |
338 |
cgaattggtgattcaccttatgtttagttcatctc |
372 |
Q |
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| T |
3823291 |
caaattggtgattcaccttatgtttggttcatctc |
3823325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3822947 - 3823054
Alignment:
| Q |
1 |
aatttgttaataaacttcacttaagggcaattgttcggaagaatctcaaatttaatttttgagtgaaacaatttttaactttgaaatcacatacagtgtt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3822947 |
aatttgttaataaacttcacttaagggcaatcgttcggaagaatctcaaatttaatttttgagtgaaacaatctttaactttgaaatcacatatagtgtt |
3823046 |
T |
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| Q |
101 |
gcaacgtt |
108 |
Q |
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| T |
3823047 |
gcaacgtt |
3823054 |
T |
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