View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13836_low_2 (Length: 710)

Name: NF13836_low_2
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13836_low_2
NF13836_low_2
[»] chr1 (1 HSPs)
chr1 (13-679)||(18044524-18045195)
[»] chr7 (2 HSPs)
chr7 (136-659)||(48369466-48369989)
chr7 (37-90)||(23533989-23534043)
[»] chr8 (5 HSPs)
chr8 (99-680)||(13978858-13979420)
chr8 (237-649)||(10241557-10241969)
chr8 (568-640)||(10283519-10283591)
chr8 (237-286)||(10263528-10263577)
chr8 (217-286)||(10271680-10271749)
[»] chr5 (1 HSPs)
chr5 (40-84)||(8020270-8020315)
[»] chr4 (3 HSPs)
chr4 (33-85)||(8844165-8844218)
chr4 (33-85)||(8857129-8857182)
chr4 (28-80)||(47239702-47239755)


Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 13 - 679
Target Start/End: Original strand, 18044524 - 18045195
Alignment:
Q  13 atcatggatggggcttgggtgggaatacccgaatccgtcggagacgggatgagatttgatttctcatctccgcgggatgggaatacccaaatatttttca 112  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18044524 atcatggatggggattgggtgggaatacccgaatccgtcggggacgggatgagatttgatttctcatccccgcgggatgggaatacccaaatatttttca 18044623  T
Q  113 actgaaagcagtgctaagatggttcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttggtgtcttatactaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |    
T  18044624 actgaaagcagtgctaagatggttcttgacaacattctcattcaagagttgcaaaacaatgttgtgtgcagaacctacacatcttggtgtgttatactga 18044723  T
Q  213 ctaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18044724 ctaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaatttac 18044823  T
Q  313 gagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattc-----aatcaacacttgttcgcttgcttccccgttgatttcccag 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  18044824 gagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatataatcaacacttgttcgcttgcttccccgttgatttcccag 18044923  T
Q  408 aatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttcca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18044924 aatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttcca 18045023  T
Q  508 ctgctaattgtaaatccttctcggtattcttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaa 607  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18045024 ctgctaattgtaaatccttctcagtattcttgtcaatgttaatgctccgtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaa 18045123  T
Q  608 tcccataacttttaccacgtctcctagcctatatcggtataaacctaaaattatataaccaagttagttaat 679  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18045124 tcccataacttttaccacgtcccctagcctatatcggtataaacctaaaattatataaccaagttagttaat 18045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 136 - 659
Target Start/End: Complemental strand, 48369989 - 48369466
Alignment:
Q  136 tcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttggtgtcttatactaactaacagatgttcctaatcccaa 235  Q
    ||||||||||||| ||| |||| | || ||| ||||||||||||  || |||||||||||||||||| ||||||| |||||||| |||||||||||| |     
T  48369989 tcttgacaacattttcactcaatatttgcaacacaatgttgtgtgtaggacctacacatcttggtgttttatactgactaacagctgttcctaatccaag 48369890  T
Q  236 gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatcg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||  ||||||||||||||||| |||||||||    
T  48369889 gtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggctccaatagcgttgactttacgagaactagtgtagcctgcatcg 48369790  T
Q  336 atgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctctttag 435  Q
    |  |||||||| |||||||||||||||||||||   | ||||| ||| |||||||||||||||||||||||||| |||||||||| ||| |||||||| |    
T  48369789 acaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccctggctctttgg 48369690  T
Q  436 ataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctcggtatt 535  Q
    ||||||| |||||||||||||| ||||| ||||||| |||||||||| |||||||||| | || ||||||||| ||||| |||||||| ||||| || ||    
T  48369689 ataaatcaacatggcttgtgaactcaacaacttccaatttctcttctactaataattttgccgctgcttccacggctaactgtaaatctttctctgtgtt 48369590  T
Q  536 cttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagc 635  Q
    |||||||||||| ||| | || | || ||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  48369589 cttgtcaatgtttatgtttagcagaagactactcctacgaataaactttagttctggagttgagttatggaatcccataacttttaccacatcccctagc 48369490  T
Q  636 ctatatcggtataaacctaaaatt 659  Q
    ||||| | |||||||||| |||||    
T  48369489 ctatacctgtataaacctgaaatt 48369466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 23533989 - 23534043
Alignment:
Q  37 atacccgaatccgtcggagacggg-atgagatttgatttctcatctccgcgggat 90  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||| |||| ||||    
T  23533989 atacccgaacccgtcggagacggggatgagattcgatttctcatccccgctggat 23534043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 99 - 680
Target Start/End: Original strand, 13978858 - 13979420
Alignment:
Q  99 ccaaatatttttcaactgaaagcagtgctaagatggttcttgacaacattctcattcaagagttccaaaacaatgttgtgtccagaacctacacatcttg 198  Q
    ||||||||| ||||| |||||||||| || | ||| |||||||||||||| |||||||||| || ||| |||||||| |||  |  ||||| | ||||||    
T  13978858 ccaaatattattcaattgaaagcagtactcaaatgtttcttgacaacattttcattcaagatttgcaacacaatgttctgtgtaagacctaaatatcttg 13978957  T
Q  199 gtgtcttatactaactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgat 298  Q
     ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||    
T  13978958 ctgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggaatgttcctttcccaacaactcggagttctaaggccccaat 13979057  T
Q  299 agtgttgaacttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttg 398  Q
    |||||||  ||| || |||  | ||||   || |||  ||||||||||||||||||| |||||||||| | |||||| || ||| |||||||| ||  |     
T  13979058 agtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttcaccacta 13979157  T
Q  399 atttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacg 498  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| |||||||||||||||||||  ||||||| || ||||||||||||||||||||       
T  13979158 atttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaattcctcttctgctaataatttag--- 13979254  T
Q  499 atgcttccactgctaattgtaaatccttctcggtattcttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttga 598  Q
           ||         ||||||  ||||| ||  ||||||| ||||||| |||||| |||| ||||||||| ||||| |||||||||||  | |||||    
T  13979255 -------ca---------gtaaatttttctctgtggtcttgtcgatgttaacgctcagcaaaacactactcctacgaataaacttgagtttcagtgttga 13979338  T
Q  599 gttatggaatcccataacttttaccacgtctcctagcctatatcggtataaacctaaaattatataaccaagttagttaata 680  Q
    ||||  |||||||||||  |||||||| |||||||||||||| |||||||| ||| ||||||||||||| ||| ||||||||    
T  13979339 gttactgaatcccataatatttaccacatctcctagcctataccggtataaccctgaaattatataaccgagtaagttaata 13979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 237 - 649
Target Start/End: Original strand, 10241557 - 10241969
Alignment:
Q  237 taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggccccgatagtgttgaacttacgagaactagtgtatcctgcatcga 336  Q
    ||||| ||||||||||| || ||||||||||||| ||||| ||||||||| | |||| | |||   ||||  || | |||||||   || || ||||| |    
T  10241557 taatgttcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaacatagccagcatcaa 10241656  T
Q  337 tgaaagacttatccaaacagttgcaacattcaatcaacacttgttcgcttgcttccccgttgatttcccagaatattacatagtgcccgggctctttaga 436  Q
      |||||||||||||||||  | |||||||||   | |||||  || |||||||| ||  |||||||||| || || ||||| || || || ||||| ||    
T  10241657 caaaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttgga 10241756  T
Q  437 taaatcgacatggcttgtgaattcaacgacttccagtttctcttctgctaataatttagacgatgcttccactgctaattgtaaatccttctcggtattc 536  Q
    |||||| |  | ||| ||  | ||||  ||||||| ||||||||| ||||| ||  | || | || |||||||| |||||||||||| ||||| || |||    
T  10241757 taaatcaatgtagctagtatagtcaatcacttccattttctcttcagctaacaacatggaagctgtttccactgataattgtaaatcattctcagtgttc 10241856  T
Q  537 ttgtcaatgttaatgctcagtaaaatactactcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagcc 636  Q
    || |||||||| ||  | || | ||   | ||||| ||||  ||||||| |||||||||||||||||||||||||||||| |||||||| || |||| ||    
T  10241857 ttatcaatgttgatagtaagcataaggttgctcctacgaagaaacttgatttttggagttgagttatggaatcccataacctttaccacatcccctaacc 10241956  T
Q  637 tatatcggtataa 649  Q
    |||||| ||||||    
T  10241957 tatatctgtataa 10241969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 640
Target Start/End: Original strand, 10283519 - 10283591
Alignment:
Q  568 tcctgcgaatgaacttgagttttggagttgagttatggaatcccataacttttaccacgtctcctagcctata 640  Q
    |||||||||  ||| ||| || ||||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  10283519 tcctgcgaagaaacctgatttctggagttgagttatggaatcccataaccttcaccacatctccgagcctata 10283591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 10263528 - 10263577
Alignment:
Q  237 taatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc 286  Q
    ||||| ||||||||||| || ||||||||||||| ||||| |||||||||    
T  10263528 taatgctcaagaatcttctggaatgttcctttccgaacaagtcggagttc 10263577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 10271680 - 10271749
Alignment:
Q  217 cagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttc 286  Q
    |||||| ||||||||| |  ||||| ||||||||||| || ||||||||||| | ||||| |||||||||    
T  10271680 cagatgctcctaatccaacataatgctcaagaatcttctggaatgttccttttcgaacaagtcggagttc 10271749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8020315 - 8020270
Alignment:
Q  40 cccgaatccgtcggagacggg-atgagatttgatttctcatctccg 84  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  8020315 cccgaacccgtcggagacggggatgagatttgatttctcatctccg 8020270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 8844165 - 8844218
Alignment:
Q  33 gggaatacccgaatccgtcggagacggg-atgagatttgatttctcatctccgc 85  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||    
T  8844165 gggaatacccgaacccgtcagggacggggatgagatttgatttctcatccccgc 8844218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 8857129 - 8857182
Alignment:
Q  33 gggaatacccgaatccgtcggagacggg-atgagatttgatttctcatctccgc 85  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||    
T  8857129 gggaatacccgaacccgtcagggacggggatgagatttgatttctcatccccgc 8857182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 47239702 - 47239755
Alignment:
Q  28 tgggtgggaatacccgaatccgtcggagac-gggatgagatttgatttctcatc 80  Q
    ||||||||||||||| |||||||||| ||| |||||||||||  ||||||||||    
T  47239702 tgggtgggaatacccaaatccgtcggggacggggatgagattcaatttctcatc 47239755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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