View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_20 (Length: 299)
Name: NF13836_low_20
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 49088773 - 49088504
Alignment:
| Q |
13 |
aaaatattactagtaccgtgcaacacgtttgtaaaggagtccatcccaaaccactatttacagttccaaagtgattcccttgactttacttactaaaata |
112 |
Q |
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| T |
49088773 |
aaaatattactagtaccgtgcaacacgtttgtaa-ggagtccatcccaaaccactatttacagttccaaagtgattcccttgactttacttactaaaata |
49088675 |
T |
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| Q |
113 |
gttgaggttcttcattccacttaaaattctacgtact-aataaggtcaaaatcatccatccagtaacatagaaaaggcaggaacccgataccttgagcac |
211 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49088674 |
gttgaggttcttcattccactaaaaattctacgtactaaataaggtcaaaatcatccatccagtaacatagaaaagtcaggaacccgataccttgagcac |
49088575 |
T |
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| Q |
212 |
tagctaggaaggcagtacgtagcgtatatatagatgcgatgcccaccattaagttgagggtctcatgatcttatt |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49088574 |
tagctaggaaggcagtacgtagcg----tatagatgcgatgcccaccattaagttgagggtctcatgatcttatt |
49088504 |
T |
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