View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_21 (Length: 293)
Name: NF13836_low_21
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 47391112 - 47391378
Alignment:
| Q |
10 |
ttattctgagctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391112 |
ttattctgagctgacacttctcaatcctctaatatcttccctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagt |
47391211 |
T |
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| Q |
110 |
ttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctccatctctgctctgatttcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391212 |
ttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctccatctctgctctgatttcag |
47391311 |
T |
|
| Q |
210 |
cattctcagtctctaatcttctcacagctccatttgcacggtccacttgaccactagcttttctcaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47391312 |
cattctcagtctctaatcttctcacagctccatttgcacggtccacttgaccactagcctttctcaa |
47391378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 40625017 - 40624752
Alignment:
| Q |
10 |
ttattctgagctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagt |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||| |
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| T |
40625017 |
ttattctgagctgacacttctcgatcctctaatatcttctctttcaaatcagaaatctccttttgcagcttagctttctgt-ttttcccaagctagaagt |
40624919 |
T |
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| Q |
110 |
ttcttcaaatattttttctccttctttgcgacttccaagcaagctgtcaccgactctgatgcacttaatttggaggcctccatctctgctctgatttcag |
209 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624918 |
ttcttcaagtattttttctccttttttgcaacttccaagcaagctgtcactgactctgatgcacttaatttggaggcctccatctctgctctgatttcag |
40624819 |
T |
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| Q |
210 |
cattctcagtctctaatcttctcacagctccatttgcacggtccacttgaccactagcttttctcaa |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624818 |
cattctcagtctctaatcttctcacagctccatttgcacggtccacttgaccactagcttttctcaa |
40624752 |
T |
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