View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_25 (Length: 278)
Name: NF13836_low_25
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 54395329 - 54395572
Alignment:
| Q |
18 |
caccaggcataccatctcccataggcacatctccaccagcaccaccttgatacatcttagcaataataggattacaaattccttccaactccttctgctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395329 |
caccaggcataccatctcccataggcacatctccaccagcaccaccttgatacatcttagcaataataggattacaaattccttccaactccttctgctt |
54395428 |
T |
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| Q |
118 |
atcctcaaactcatccacttccgccatttgattcccctccaaccactgtatagcatcttccacagccttctcaatcttctccttatcatcatgactcaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54395429 |
atcctcaaactcatccacttccgccatttgattcccctccaaccactgtattgcatcttccacagccttctcaatcttctccttatcttcatgactcaac |
54395528 |
T |
|
| Q |
218 |
ttcccaccaatcttctcatcctttattgtattcctcatattata |
261 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54395529 |
ttcccaccaatcttctcatccttaattgtattcctcatattata |
54395572 |
T |
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