View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_27 (Length: 274)
Name: NF13836_low_27
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 47486587 - 47486327
Alignment:
| Q |
1 |
tattatcagcacagagtggatacatctgtgcctatagaggatacggtaaggtttt-tattttgagcata--gtgcatcacatatgttatttcttattaat |
97 |
Q |
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| T |
47486587 |
tattatcagcacagagtggatacatctgtgcctatagaggatacggtaaggttttctattttgagcatatagtgcatcacatatgttatttcttattgat |
47486488 |
T |
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| Q |
98 |
atacattatctgacttattacactagatgcattgttaacaattttcttctattacaggtaggtgaacttaagaaattggtggaagaaggaaaagtgaagt |
197 |
Q |
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| T |
47486487 |
atacattatctgacttattacactagatgcattgttaacaagtttcttctattacaggtaggtgaacttatgaagttggtggaagaaggaaaagtgaagt |
47486388 |
T |
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| Q |
198 |
atatagggctatctgaagctagcccagatacaataaggagagcgcacaccattcttcccat |
258 |
Q |
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| T |
47486387 |
atatagggctatctgaagctagcccagatacaataaggagagcgcacaccattcatcccat |
47486327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 47473768 - 47473627
Alignment:
| Q |
102 |
attatctgacttattacactagatgcattgttaacaattttcttctattacaggtaggtgaacttaagaaattggtggaagaaggaaaagtgaagtatat |
201 |
Q |
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| T |
47473768 |
attatttggcttatttcactagatgtgttgttaacaagtttgttgtgttataggtaggtgaacttaagaaactggtggaagagggaaaagttaagtatat |
47473669 |
T |
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| Q |
202 |
agggctatctgaagctagcccagatacaataaggagagcgca |
243 |
Q |
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| T |
47473668 |
tggactatctgaagccagccctgatacaataaggagagcgca |
47473627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 47477066 - 47476928
Alignment:
| Q |
102 |
attatctgacttattacactagatgcattgttaacaattttcttctattacaggtaggtgaacttaagaaattggtggaagaaggaaaagtgaagtatat |
201 |
Q |
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| T |
47477066 |
attatttggcttatttcactagatgtgttgttaacaagtttgttgtgctataggtaggtgaacttaagaaactggtggaagagggaaaagttaaatatat |
47476967 |
T |
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| Q |
202 |
agggctatctgaagctagcccagatacaataaggagagc |
240 |
Q |
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| T |
47476966 |
tggactatctgaagccagccccgatacaataaggagagc |
47476928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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