View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13836_low_28 (Length: 257)

Name: NF13836_low_28
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13836_low_28
NF13836_low_28
[»] chr6 (9 HSPs)
chr6 (67-152)||(27589642-27589727)
chr6 (177-240)||(27695299-27695362)
chr6 (187-240)||(27682331-27682384)
chr6 (188-238)||(27715243-27715293)
chr6 (176-240)||(27589841-27589905)
chr6 (176-240)||(27607817-27607881)
chr6 (176-240)||(27674265-27674329)
chr6 (54-109)||(27674058-27674113)
chr6 (176-215)||(27703602-27703641)
[»] chr1 (1 HSPs)
chr1 (77-142)||(264833-264898)
[»] chr8 (1 HSPs)
chr8 (177-240)||(29270538-29270601)
[»] scaffold0349 (1 HSPs)
scaffold0349 (188-238)||(16651-16701)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 27589642 - 27589727
Alignment:
Q  67 tttaaacaacaaaccacaaacctgtgattaatttagagaatctagttccagtggtccttttgttttctgaacctagtcctgtattt 152  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||| |||| |||| ||||    
T  27589642 tttaaacagaaaaccacaaacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaattt 27589727  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 27695299 - 27695362
Alignment:
Q  177 ataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    ||||||||  |||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  27695299 ataaggatctgtgaataccacattctcctcctccgtgttgcttttctcattccacacgtggatt 27695362  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 27682384 - 27682331
Alignment:
Q  187 gtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  27682384 gtgaataccacattctcctcctccgtgttgcttttctcattccacacgtggatt 27682331  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 27715243 - 27715293
Alignment:
Q  188 tgaataccacattctcctcctccgtgtttttgttctcattccacacgtgga 238  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  27715243 tgaataccacattctcctcctccgtgttgcttttctcattccacacgtgga 27715293  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 27589841 - 27589905
Alignment:
Q  176 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    ||||||||| | | ||||||||||||||||||||||||||  | ||||| |||||||||||||||    
T  27589841 tataaggattgataaataccacattctcctcctccgtgttgcttttctctttccacacgtggatt 27589905  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 27607817 - 27607881
Alignment:
Q  176 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    |||||||||  |||||||||||||||| |||||| |||||  | |||||||||||||||||||||    
T  27607817 tataaggatcagtgaataccacattcttctcctctgtgttgcttttctcattccacacgtggatt 27607881  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 27674265 - 27674329
Alignment:
Q  176 tataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    ||||||||| | | ||||||||||||||||||||||||||  | ||||| |||||||||||||||    
T  27674265 tataaggatcgataaataccacattctcctcctccgtgttgcttttctctttccacacgtggatt 27674329  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 27674058 - 27674113
Alignment:
Q  54 taataatgtaaaatttaaacaacaaaccacaaacctgtgattaatttagagaatct 109  Q
    |||| ||||||| ||||||||  ||||||||||||||||||||||| |||||||||    
T  27674058 taattatgtaaagtttaaacagaaaaccacaaacctgtgattaattgagagaatct 27674113  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 27703602 - 27703641
Alignment:
Q  176 tataaggataggtgaataccacattctcctcctccgtgtt 215  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  27703602 tataaggatcgatgaataccacattctcctcctccgtgtt 27703641  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 264833 - 264898
Alignment:
Q  77 aaaccacaaacctgtgattaatttagagaatctagttccagtggtccttttgttttctgaacctag 142  Q
    |||||||||||||| |||||||| ||||||||||| ||| ||| ||||||||||||||||| ||||    
T  264833 aaaccacaaacctgcgattaattgagagaatctagctccggtgctccttttgttttctgaatctag 264898  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 29270538 - 29270601
Alignment:
Q  177 ataaggataggtgaataccacattctcctcctccgtgtttttgttctcattccacacgtggatt 240  Q
    ||||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||||||    
T  29270538 ataaggatctgtgaataccacattctcctcatccgtgttgcttttctcattccacacgtggatt 29270601  T

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Target: scaffold0349 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 16701 - 16651
Alignment:
Q  188 tgaataccacattctcctcctccgtgtttttgttctcattccacacgtgga 238  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  16701 tgaataccacattctcctcctccgtgttgcttttctcattccacacgtgga 16651  T

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