View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_29 (Length: 255)
Name: NF13836_low_29
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 22362063 - 22362307
Alignment:
| Q |
1 |
ccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatattctgttgcacttggattcacatgtggtgccatcattgatccctaac |
100 |
Q |
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| T |
22362063 |
ccgtttggaaatagtatctgaattcttccataacctcttaatactatggtatactctgttgcacttggattcacatgtggtgccatcattgatccctaac |
22362162 |
T |
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| Q |
101 |
atacacaacgcatgaaaaagaaaagatgaataagaacc---cagcaagatcatggttaaaatatgtaaggtcttgtttgtttgcataccgcggtgagatt |
197 |
Q |
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|||||||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362163 |
atacacaatgcatgaaatagaaaagatgaataagaacccagcagcaatatcatggttaaaatatgtaaggtcttgtttgtttgcataccgcggtgagatt |
22362262 |
T |
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| Q |
198 |
gacgtgaaaaacaccgatatcaggtattttgagcggagaataatc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362263 |
gacgtgaaaaacaccgatatcaggtattttgagcggagaataatc |
22362307 |
T |
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