View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13836_low_3 (Length: 542)
Name: NF13836_low_3
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_3 |
 | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
| [»] scaffold1956 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 525
Target Start/End: Complemental strand, 55500960 - 55500446
Alignment:
| Q |
9 |
acatcatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtatcactac |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
55500960 |
acattatcatactctctcaacattatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtaccaccac |
55500861 |
T |
|
| Q |
109 |
cagcaacctctcaaaattcaattcctatagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
208 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55500860 |
cagcaacctcttaaaattcaattcctacagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
55500761 |
T |
|
| Q |
209 |
gtgtgggaggtttagatttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttccc |
308 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55500760 |
gtgtgagaggtttagatttgttcttctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaattttgttttccc |
55500661 |
T |
|
| Q |
309 |
ctttctaattttcattaaaactaattttgtgttcttgtagttttcttttcattcaccatcattattaatgggtgttgagtcatattttgaatcacactca |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55500660 |
ctttctaattttcattaaaactaatttcgtgttcttgcagttttcttttcattcaccattattattaatgggtgttgagtc--attttgaatcacactca |
55500563 |
T |
|
| Q |
409 |
atcaataacatttttgaaacccaaatgaaaaaatcaagacccattttttgtttgtagctttatccaattcagcacaagagtatgctattgttttgattag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55500562 |
atcaataacatttttgaaacccaaatgaaaaaatcaagacccattttttgtttgtagctttatccaattcagcacaagagtatgctattgttttgattag |
55500463 |
T |
|
| Q |
509 |
gtttaataggtcgttac |
525 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
55500462 |
ggttaataggtctttac |
55500446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 140 - 474
Target Start/End: Original strand, 43079403 - 43079740
Alignment:
| Q |
140 |
ttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtgggaggtttagatttgttcctctttgc |
239 |
Q |
| |
|
||||||||||||||||||||||| |||||| || | |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
43079403 |
ttgaatcaccattttgcaaaacaagaatatttg------tgattcactatttctagcatttcaacataagtgtgggaggtttagatttgttcccctttgc |
43079496 |
T |
|
| Q |
240 |
tggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaattttcattaaaactaattttgtg |
339 |
Q |
| |
|
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||| ||||||| || |
|
|
| T |
43079497 |
tgaaattttctcacttccataaatccagaatcacaaatttcatcttcctcacaacaattacg-tttccccattctaattttcattcaaattaattttatg |
43079595 |
T |
|
| Q |
340 |
ttcttgtagttttcttttcattcaccatcattat---------taatgggtgttgagtcatattttgaatcacactcaatcaataacatttttgaaaccc |
430 |
Q |
| |
|
||||| | ||||||||||||| | | ||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
43079596 |
ttcttactatattcttttcattcatctttgatataaatgtgtgtaatgggtgttgaatcatattttgaatcatactcaatcagtaacattttcgaaaccc |
43079695 |
T |
|
| Q |
431 |
aaatgaaaaaatcaagacccattt-tttgtttgtagctttatcca |
474 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43079696 |
atatgaaaaaatcaagacccatttattttggtgtagctttatcca |
43079740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 507
Target Start/End: Original strand, 16043455 - 16043976
Alignment:
| Q |
9 |
acatcatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtatcactac |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
16043455 |
acattatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgcatcttccttcacgcatcaacactagtaccaccac |
16043554 |
T |
|
| Q |
109 |
cagcaacctctcaaaattcaattcctatagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
208 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16043555 |
gagcaacctctcaaaatccaattccaacagcttgaatcaccattttgcaaa-catgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
16043653 |
T |
|
| Q |
209 |
gtgtgggaggtttagatttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttccc |
308 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16043654 |
gtgtgagaggtttagatttgttcctctttgctgtaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttccc |
16043753 |
T |
|
| Q |
309 |
ctttctaattttcattaaaactaattttgtgttcttgtagttttcttttcattcac--------------------catcattatta---atgggtgttg |
385 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || || |||||||| ||||||||| |
|
|
| T |
16043754 |
ctttctaattttcattaaaactaatttcgtgttcttgcagttttcttttcatttacgattttcttttctttttattcaccattattattaatgggtgtta |
16043853 |
T |
|
| Q |
386 |
agtcatattttgaatcacactcaatcaataacatttttgaaacccaaatgaaaaaatcaagaccca-ttttttgtttgtagctttatccaattcagcaca |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16043854 |
agtcatattttgaatcacactcaatcaataacatttttgaaacccaaatgaaaaaatcaagacccatttttttgtttgtagctttatccaattcagcaca |
16043953 |
T |
|
| Q |
485 |
agagtatgctattgttttgatta |
507 |
Q |
| |
|
| | ||||||||||||||||||| |
|
|
| T |
16043954 |
acactatgctattgttttgatta |
16043976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 27463 - 27815
Alignment:
| Q |
9 |
acatcatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtatcactac |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |
|
|
| T |
27463 |
acattatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatcaacactagtaccaccac |
27562 |
T |
|
| Q |
109 |
cagcaacctctcaaaattcaattcctatagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
208 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27563 |
cagcaacctctcaaaattcaattccaacagcttgaatcaacattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgg |
27662 |
T |
|
| Q |
209 |
gtgtgggaggtttagatttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttccc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27663 |
atgtgggaggtttagatttgttcctctttgctggaattttctcactttcataaacacataatcacaaatttcatcttcctcacaacaatttcgttttccc |
27762 |
T |
|
| Q |
309 |
ctttctaattttcattaaaactaattttgtgttcttgtagttttcttttcatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
27763 |
ctttctaattttcattaaaactaatttcgtgttcttgctgttttcttttcatt |
27815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 349 - 507
Target Start/End: Original strand, 27826 - 27983
Alignment:
| Q |
349 |
ttttcttttcattcaccatcattattaatgggtgttgagtcatattttgaatcacactcaatcaataacatttttgaaacccaaatgaaaaaatcaagac |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27826 |
ttttcttttcattcaccatcattattaatgggtgttgagtcatattttgaatcacactcaatcaataacatttttgaaacccaaatgaaaaaatcaagac |
27925 |
T |
|
| Q |
449 |
ccattttttgtttgtagctttatccaattcagcacaagagtatgctattgttttgatta |
507 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
27926 |
cca-tttttgtttgtagctttatccaattcagcacaacaatatgctattgttttgatta |
27983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 40427296 - 40426953
Alignment:
| Q |
17 |
atactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtatcactaccagcaacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
40427296 |
atactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatca-cactagtaccaccaccagcaacc |
40427198 |
T |
|
| Q |
117 |
tctcaaaattcaattcctatagcttgaatcaccattttgcaaaacatgaatatatgaatatcttattcaccatttctagcatttcaacatgggtgtggga |
216 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
40427197 |
tctcaaaattcaattccaagagcttgaatcaccattttgcaaaacatgaatatatgaatatcttatttaccgtttctagcatttcaacgtgggtgtggga |
40427098 |
T |
|
| Q |
217 |
ggtttagatttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacaacaatttcgttttcccctttctaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40427097 |
ggtttagatttgttcctctttgctggaattttctcacttccataaacacataatcacaaatttcatcttcctcacagcaatttcgttttcccctttctaa |
40426998 |
T |
|
| Q |
317 |
ttttcattaaaactaattttgtgttcttgtagttttcttttcatt |
361 |
Q |
| |
|
||||||||| || |||||| |||||||| ||||||||||||||| |
|
|
| T |
40426997 |
ttttcattacaagtaatttcttgttcttgcagttttcttttcatt |
40426953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 40426942 - 40426875
Alignment:
| Q |
349 |
ttttcttttcattcaccatcattattaatgggtgttgagtcatattttgaatcacactcaatcaataa |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
40426942 |
ttttcttttcattcaccattattattaatgggtgttgagtcatattttgaatcacacttaataaataa |
40426875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1956 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold1956
Description:
Target: scaffold1956; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 1108 - 1210
Alignment:
| Q |
9 |
acatcatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagtatcactac |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || |
|
|
| T |
1108 |
acattatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatc-acactagtaccaccac |
1206 |
T |
|
| Q |
109 |
cagc |
112 |
Q |
| |
|
|||| |
|
|
| T |
1207 |
cagc |
1210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University