View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_34 (Length: 226)
Name: NF13836_low_34
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 45593799 - 45593574
Alignment:
| Q |
1 |
aatgccgcaacagcatccttcagatgaacaaaagaatgttatggtacacaatatcatgattttcttgtgataatatcaagtcctcccatgaatggcctca |
100 |
Q |
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| T |
45593799 |
aatgccgcaacagcatccttcagatgaacaaaagaatgttatggtacacaatatcatgattttcttgtgataatatcaagtcctcccatgaatggcctca |
45593700 |
T |
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| Q |
101 |
atggctccggaataaggacagatccgtcttcttgttggtaattctcaagtagacatataatcattcgcggtacagcacatgctgttgcatttaacgtgtg |
200 |
Q |
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| T |
45593699 |
atggctccggaataaggacagatccgtcttcttgttggtaattctcaagtagacatataatcattcgcggtacagcacatgctgttgcatttaacgtgtg |
45593600 |
T |
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| Q |
201 |
aacaaactgtggtggagcgagattgc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45593599 |
aacaaactgtggtggagcgagattgc |
45593574 |
T |
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