View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_5 (Length: 484)
Name: NF13836_low_5
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 44946109 - 44946226
Alignment:
| Q |
168 |
tcctgagaaaatgtttggctcaagtgatctactataaaagaaaaaggtaggttgagttgaacatctttagtgttagatttagaaaccggaaaacatgaga |
267 |
Q |
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| T |
44946109 |
tcctgagaagatgtttggctcaagtgatcta---taaaagaaaaaggtaggttgagttgaacatctttagtgttagatatagaaactggaaaacatgaga |
44946205 |
T |
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| Q |
268 |
atggattaatccaaccatata |
288 |
Q |
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| T |
44946206 |
atggattgatccaaccatata |
44946226 |
T |
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Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 44946234 - 44946322
Alignment:
| Q |
378 |
tcaaacataagtaattctagcatcaatttcattagaaatagaaatgagatggtaatcaaaataattgagtgactcacactcatcatagc |
466 |
Q |
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| T |
44946234 |
tcaaacataagtaattctagcatcaatttcattagaaatagaaatgagatggtaatcaaaataattgagtgactcacactcatcatagc |
44946322 |
T |
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