View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_6 (Length: 471)
Name: NF13836_low_6
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 30 - 457
Target Start/End: Complemental strand, 52465329 - 52464915
Alignment:
| Q |
30 |
tcgacattttaaacaatttagggaca--gagaaaattattcaaaaattattttaaatttgttgtccaaatatgatagatgaagaaacatgttatttgtac |
127 |
Q |
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| T |
52465329 |
tcgacattttaaacaatttagggacaaagagaaatttattcaaaaattattttaaatttgttgtccaaatatgatagatgaagaaatatgt-----gtac |
52465235 |
T |
|
| Q |
128 |
aaagtagtg--atacatagtagggattggggagtaatattctctttacttgtattgttgtatgtcgacagaactatacagtacaccaacaagtgggtcaa |
225 |
Q |
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| T |
52465234 |
aaagtagtgtgatacataatagggattggggagtaatattctctttacctgtattgttgtatgtcgacagaactatacagtacaccaacaagtgggtcaa |
52465135 |
T |
|
| Q |
226 |
gatattttgttctgatgaagagacgtgataacgtgataacgtgatatttctcccatgttacagtgttcattgacagtgttataagtaagctttcatatct |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52465134 |
gatattttgttctgatgaagagacgtgataacgtgata--------tttctcccatgttacagtgttcattgacagtgttataagtaagctttcatatct |
52465043 |
T |
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| Q |
326 |
ctcactcaccaaactaccaacaacctcaactacaagatgactgacaccatagcagcaagtaataatttcatagctacattcatgtggttcacaccctctc |
425 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52465042 |
ctcac----caaactaccaacaacctcaactacaagatgactgacaccatagcagcaagtaataatttcatagctacattcatgtggttcacaccctctc |
52464947 |
T |
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| Q |
426 |
ctcttttcatctttgttaaccttgtcattggt |
457 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52464946 |
ctcttttcatctttgttaaccttgtcattggt |
52464915 |
T |
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