View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13836_low_7 (Length: 462)

Name: NF13836_low_7
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13836_low_7
NF13836_low_7
[»] chr6 (11 HSPs)
chr6 (246-458)||(7046714-7046929)
chr6 (27-111)||(2949778-2949862)
chr6 (18-62)||(2981666-2981710)
chr6 (405-458)||(9159521-9159574)
chr6 (405-458)||(9170854-9170907)
chr6 (405-458)||(7025793-7025846)
chr6 (405-458)||(7029850-7029903)
chr6 (406-458)||(7041534-7041586)
chr6 (69-111)||(2981414-2981456)
chr6 (62-102)||(3028508-3028548)
chr6 (405-458)||(7012857-7012910)
[»] chr2 (1 HSPs)
chr2 (117-247)||(20348285-20348415)
[»] chr5 (1 HSPs)
chr5 (114-243)||(26442689-26442818)
[»] chr8 (4 HSPs)
chr8 (116-242)||(37242515-37242641)
chr8 (404-449)||(44688820-44688865)
chr8 (208-241)||(26781861-26781894)
chr8 (109-169)||(287252-287312)
[»] chr3 (8 HSPs)
chr3 (386-458)||(9343863-9343935)
chr3 (404-458)||(41980890-41980944)
chr3 (332-458)||(41985590-41985718)
chr3 (404-458)||(9448350-9448404)
chr3 (404-458)||(9494834-9494888)
chr3 (409-449)||(9407407-9407447)
chr3 (409-449)||(9416614-9416654)
chr3 (409-449)||(9441816-9441856)
[»] chr1 (4 HSPs)
chr1 (405-458)||(231618-231671)
chr1 (405-458)||(8814388-8814441)
chr1 (386-458)||(235231-235303)
chr1 (405-453)||(251425-251473)
[»] chr7 (1 HSPs)
chr7 (344-435)||(3695664-3695757)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 246 - 458
Target Start/End: Original strand, 7046714 - 7046929
Alignment:
Q  246 agaatcggacaaaggcggaagcagaccttgatccaagtccaaa-catacctcgcaagtgtcgcacgttttctaagtcctcttaagatatcatcactaatg 344  Q
    ||||||| ||||| ||||||||  ||||||||||||||||||| |||| |||||  ||| | || ||   ||||||| ||| ||||||||| ||||||||    
T  7046714 agaatcgcacaaaagcggaagccaaccttgatccaagtccaaaacatagctcgcctgtgacccaagtcgactaagtcttctaaagatatcagcactaatg 7046813  T
Q  345 atcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaact 442  Q
    |||||||||||||| ||||||||| | | |||||||  | |  ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  7046814 atcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaact 7046913  T
Q  443 tcacccacttcatctc 458  Q
    ||||||||||| ||||    
T  7046914 tcacccacttcttctc 7046929  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 2949862 - 2949778
Alignment:
Q  27 tcaatggaatcatagagagcaaggtggtggcttaatgtagcctaagatggctacatgaattaatgctattgtttatgagaaaaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||||| |||||||||||||||    
T  2949862 tcaatggaatcatagagagcaaggtggtggcttaatgtagcctaaggtggcttaatggattaatgctatcgtttatgagaaaaat 2949778  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2981710 - 2981666
Alignment:
Q  18 gttcataggtcaatggaatcatagagagcaaggtggtggcttaat 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2981710 gttcataggtcaatggaatcatagagagcaaggtggtggcttaat 2981666  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 9159574 - 9159521
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctc 9159521  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 9170854 - 9170907
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctc 9170907  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 7025793 - 7025846
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctc 7025846  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 7029850 - 7029903
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctc 7029903  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 7041534 - 7041586
Alignment:
Q  406 cccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||| ||||    
T  7041534 cccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctc 7041586  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 2981456 - 2981414
Alignment:
Q  69 taagatggctacatgaattaatgctattgtttatgagaaaaat 111  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  2981456 taagatggctaaatggattaatgctattgtttatgagaaaaat 2981414  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 3028548 - 3028508
Alignment:
Q  62 tgtagcctaagatggctacatgaattaatgctattgtttat 102  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  3028548 tgtagcctaagatggctaaatggattaatgctattgtttat 3028508  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 7012857 - 7012910
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||||||  ||||| |||||||| || ||||||||||||||| ||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctc 7012910  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 20348415 - 20348285
Alignment:
Q  117 tctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcactaa 216  Q
    ||||||||||||||||||| ||| ||  ||||||||| |||| |||||| | || ||||| |||||| |||||||||||||||||| |||||||||||||    
T  20348415 tctctattataaacatttgccttaatttttttgaagagtacacttggcactcttttatgtaaaactttatttaatgtattacacacttaagcatcactaa 20348316  T
Q  217 tacacatgtgcacctcatcatctaattgtag 247  Q
    |||| |||| |||||||||||||||||||||    
T  20348315 tacaaatgtacacctcatcatctaattgtag 20348285  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 26442689 - 26442818
Alignment:
Q  114 ctatctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcac 213  Q
    |||||| ||||||| | ||||| ||| ||  ||||||||| |||| |||| | | || ||||| |||||||||||||||||||||||||||| |||||||    
T  26442689 ctatctttattatatatatttgccttaatttttttgaagagtacacttggtactcttctatgtaaaacttcatttaatgtattacacacctaggcatcac 26442788  T
Q  214 taatacacatgtgcacctcatcatctaatt 243  Q
     |||||||||||||||||||||||||||||    
T  26442789 caatacacatgtgcacctcatcatctaatt 26442818  T

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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 37242515 - 37242641
Alignment:
Q  116 atctctattataaacatttgacttcatgattttgaagaatacaattggcatttttatatgttaaacttcatttaatgtattacacacctaagcatcacta 215  Q
    |||| ||||||| | ||||| ||| ||  ||||||||| |||| |||||| | || ||||| |||||||||||||||||||||||||| | ||||||| |    
T  37242515 atctttattatatatatttgccttaatttttttgaagagtacacttggcactcttctatgtaaaacttcatttaatgtattacacacccaggcatcacca 37242614  T
Q  216 atacacatgtgcacctcatcatctaat 242  Q
    |||||||||||||||| ||||||||||    
T  37242615 atacacatgtgcaccttatcatctaat 37242641  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 44688865 - 44688820
Alignment:
Q  404 tccccaagaacaaaactctatcccctaaactcgttaacttcaccca 449  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||    
T  44688865 tccccaagaacaaaattctattccctaaactcgttaactttaccca 44688820  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 26781894 - 26781861
Alignment:
Q  208 catcactaatacacatgtgcacctcatcatctaa 241  Q
    |||||||||||||| |||||||||||||||||||    
T  26781894 catcactaatacacgtgtgcacctcatcatctaa 26781861  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 287252 - 287312
Alignment:
Q  109 aatctctatctctattataaacatttgacttcatgattttgaagaatacaattggcatttt 169  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||| | ||||  |||||||||    
T  287252 aatctctatctctattataaacatttgccttaatttttttgaaaagtacacatggcatttt 287312  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 458
Target Start/End: Original strand, 9343863 - 9343935
Alignment:
Q  386 cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||| |||   |||||||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  9343863 cagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctc 9343935  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 41980890 - 41980944
Alignment:
Q  404 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||    
T  41980890 tccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctc 41980944  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 458
Target Start/End: Original strand, 41985590 - 41985718
Alignment:
Q  332 atcatcactaatgatcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccct 429  Q
    ||||||||||| ||| |||||||| || ||| ||||| | | ||| |||||| |  ||||||||||| ||    ||||||||||||||||||||||||||    
T  41985590 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 41985689  T
Q  430 aaactcgttaacttcacccacttcatctc 458  Q
    |||||||  ||||| ||||| ||| ||||    
T  41985690 aaactcgccaacttgacccatttcttctc 41985718  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 9448350 - 9448404
Alignment:
Q  404 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||||||||||||| |||||||||||| | |||||||||||||| ||| ||||    
T  9448350 tccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctc 9448404  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Complemental strand, 9494888 - 9494834
Alignment:
Q  404 tccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||||||||||||| ||||||||||||||| | || ||||||||  |||||||    
T  9494888 tccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctc 9494834  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 9407407 - 9407447
Alignment:
Q  409 aagaacaaaactctatcccctaaactcgttaacttcaccca 449  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  9407407 aagaacaaaaccctatcccctaaactcatcaacttcaccca 9407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 9416614 - 9416654
Alignment:
Q  409 aagaacaaaactctatcccctaaactcgttaacttcaccca 449  Q
    |||||||| || ||||||||||||||||| |||||||||||    
T  9416614 aagaacaacaccctatcccctaaactcgtcaacttcaccca 9416654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 9441856 - 9441816
Alignment:
Q  409 aagaacaaaactctatcccctaaactcgttaacttcaccca 449  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  9441856 aagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 231618 - 231671
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||||||||||||| ||||||||||| | |  ||||||||||||||||||||    
T  231618 ccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctc 231671  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 8814441 - 8814388
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    |||||| ||||||||||||||||||||| |||  ||||||||||||||| ||||    
T  8814441 ccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctc 8814388  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 458
Target Start/End: Original strand, 235231 - 235303
Alignment:
Q  386 cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactcgttaacttcacccacttcatctc 458  Q
    ||||||||||| ||  || ||||||||| |||||||||||||||||| | |  ||||||||||||||| ||||    
T  235231 cagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctc 235303  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 251473 - 251425
Alignment:
Q  405 ccccaagaacaaaactctatcccctaaactcgttaacttcacccacttc 453  Q
    |||||||||||||||||||||||||| | |||  ||||| |||||||||    
T  251473 ccccaagaacaaaactctatcccctatattcgccaactttacccacttc 251425  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 3695664 - 3695757
Alignment:
Q  344 gatcacacaattcccgttggcaacaaaaagatctgaagcaaa--cagaaaacgaaaatttcatccccaagaacaaaactctatcccctaaactc 435  Q
    ||||||||||||||| |||||| || | | ||| |||||||   ||||||| ||| || | || || |||||||||||||||||||||||||||    
T  3695664 gatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactc 3695757  T

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