View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_low_8 (Length: 461)
Name: NF13836_low_8
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 139 - 370
Target Start/End: Original strand, 44311174 - 44311405
Alignment:
| Q |
139 |
tagatgcatctggtttgaggaagttgtcattcaattaacatattgtgatgtaaatctcaatttcaacttctctcctttcttaattttgttcctattattc |
238 |
Q |
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| T |
44311174 |
tagatgcatctggtttgaggaagttgtcattcaattaacatattgtgatgtaaatctcaatttcaacttctctcctttcttaattttgtttctattattc |
44311273 |
T |
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| Q |
239 |
gctcatcagttttagttttagataaaaaatggaaaacgaattcaacaatttttcataaaattgaacccacatgctatgaatttttctaaaaatgttaaat |
338 |
Q |
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| T |
44311274 |
gctcatcagttttagttttagataaaaaatggaaaacgaattcaacaatttttcataaaattgaacccacatgctatgaatttttctaaaaatgttaaat |
44311373 |
T |
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| Q |
339 |
ttagaatcatagagattcttgacaacaatgat |
370 |
Q |
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| T |
44311374 |
ttagaatcatagagattcttgacaacaatgat |
44311405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 373 - 447
Target Start/End: Original strand, 44311654 - 44311728
Alignment:
| Q |
373 |
ttcacgtagtattattattctttgtgtctgcatttgtaagaaaagaagaaatgaactaacattcccaagaataat |
447 |
Q |
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| T |
44311654 |
ttcacatagtattattattcgttgtgtctgcatttttaagaaaagaagaaatgaactaacattcccaagaataat |
44311728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44311031 - 44311066
Alignment:
| Q |
1 |
cactaatcttttaaacaacttttgtcaccattgatt |
36 |
Q |
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| T |
44311031 |
cactaatcttttaaacaacttttgtcaccattgatt |
44311066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 18701454 - 18701528
Alignment:
| Q |
373 |
ttcacgtagtattattattctttgtgtctgcatttgtaagaaaagaa---gaaatgaactaacattcccaagaata |
445 |
Q |
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| T |
18701454 |
ttcacatagtattactattcgttgtgtctacaattgtaagaaaagaacaggaaatgaac-aacattctcaagaata |
18701528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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