View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13837_high_12 (Length: 324)

Name: NF13837_high_12
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13837_high_12
NF13837_high_12
[»] chr5 (2 HSPs)
chr5 (13-300)||(18664264-18664551)
chr5 (180-300)||(18664731-18664851)
[»] chr1 (2 HSPs)
chr1 (13-300)||(15079277-15079564)
chr1 (180-300)||(15078977-15079097)
[»] chr2 (2 HSPs)
chr2 (13-247)||(7534813-7535047)
chr2 (13-247)||(7449275-7449509)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 18664264 - 18664551
Alignment:
Q  13 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18664264 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 18664363  T
Q  113 tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18664364 tcttctgcaaacccattcttagcgagctgctttatcataatacatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta 18664463  T
Q  213 cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtac 300  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||  ||| | |||||||||| |||||||||||||||| |||||||    
T  18664464 cagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtac 18664551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 18664731 - 18664851
Alignment:
Q  180 tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg 279  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18664731 tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacaaatg 18664830  T
Q  280 ttgtaaaacatatatgtgtac 300  Q
    |||||||||||||||||||||    
T  18664831 ttgtaaaacatatatgtgtac 18664851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 15079564 - 15079277
Alignment:
Q  13 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15079564 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 15079465  T
Q  113 tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  15079464 tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgttcattcatgttcttgaatacgttgactgcatcatcta 15079365  T
Q  213 cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtac 300  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||  ||| | |||||||||| |||||||||||||||| |||||||    
T  15079364 cagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtac 15079277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 15079097 - 15078977
Alignment:
Q  180 tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg 279  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  15079097 tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgacaaatg 15078998  T
Q  280 ttgtaaaacatatatgtgtac 300  Q
    ||||||||||||| |||||||    
T  15078997 ttgtaaaacatatctgtgtac 15078977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 7534813 - 7535047
Alignment:
Q  13 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||    
T  7534813 aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa 7534912  T
Q  113 tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta 212  Q
    ||||||| |||||||||||| ||||| ||| |||||||| |||    |||||||||||||  ||||| |||| ||||||| |||| || |||||||||||    
T  7534913 tcttctggaaacccattcttggcgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatcta 7535012  T
Q  213 cagaaccacattgaaaatacatctctaatattcta 247  Q
     ||||||||||| |||||||||||| |||| ||||    
T  7535013 gagaaccacattcaaaatacatctccaatactcta 7535047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 7449275 - 7449509
Alignment:
Q  13 aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||    
T  7449275 aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa 7449374  T
Q  113 tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta 212  Q
    ||||||||||| ||||||||  |||| ||| |||||||| |||    |||||||||||||  ||||| |||| ||||||| |||| || |||||||||||    
T  7449375 tcttctgcaaaaccattcttgacgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatcta 7449474  T
Q  213 cagaaccacattgaaaatacatctctaatattcta 247  Q
     ||||||||||| |||||||||||| |||| ||||    
T  7449475 gagaaccacattcaaaatacatctccaatactcta 7449509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University