View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13837_high_2 (Length: 704)

Name: NF13837_high_2
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13837_high_2
NF13837_high_2
[»] chr4 (7 HSPs)
chr4 (102-689)||(46873366-46873953)
chr4 (365-439)||(46891043-46891117)
chr4 (16-84)||(24258953-24259021)
chr4 (482-621)||(46891255-46891396)
chr4 (642-689)||(46891392-46891439)
chr4 (522-581)||(18968310-18968369)
chr4 (552-581)||(35522102-35522131)
[»] chr8 (1 HSPs)
chr8 (16-86)||(7349495-7349565)
[»] chr3 (1 HSPs)
chr3 (16-84)||(54934017-54934085)
[»] chr1 (5 HSPs)
chr1 (361-466)||(48232114-48232219)
chr1 (361-466)||(48237154-48237259)
chr1 (243-293)||(48232222-48232273)
chr1 (243-293)||(48237262-48237313)
chr1 (536-581)||(26238437-26238482)
[»] chr7 (1 HSPs)
chr7 (522-570)||(28726955-28727003)


Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 102 - 689
Target Start/End: Original strand, 46873366 - 46873953
Alignment:
Q  102 aattttctagatgctgtgtagaatgccattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcg 201  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873366 aattttctagatgctgtgtagaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcg 46873465  T
Q  202 ttgtctattatgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873466 ttgtctattatgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattg 46873565  T
Q  302 ttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttctt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873566 ttatattgtttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttctt 46873665  T
Q  402 ccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcg 501  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873666 ccataattaagccgtggcatggtggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcg 46873765  T
Q  502 gttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873766 gttcgcggaaaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattag 46873865  T
Q  602 cgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcataacacttgaatgaaattatgaattt 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46873866 cgagttgttcaaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcacaacacttgaatgaaattatgaattt 46873953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 46891043 - 46891117
Alignment:
Q  365 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt 439  Q
    |||||||||||||||||||||||||||||||||||| |||||| |  || |||||||||||||||||||||||||    
T  46891043 ttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 24258953 - 24259021
Alignment:
Q  16 acttgattctgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatg 84  Q
    |||| |||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||| |||||    
T  24258953 actttattctgctatatgatggtttattacattaatcttcatatgcgttaatttttacttatatacatg 24259021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 621
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
Q  482 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 580  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
Q  581 tgacttttcg-cggggcattagcgagttgttcaaatcccgct 621  Q
    | |  ||| |  |||||| ||| || ||||||||||||||||    
T  46891355 taaagtttggtgggggcaatagtgatttgttcaaatcccgct 46891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 689
Target Start/End: Original strand, 46891392 - 46891439
Alignment:
Q  642 ccgctatttaacaacacttgcataacacttgaatgaaattatgaattt 689  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  46891392 ccgctatttaacaacacttacataatacttgaatgaaattctgaattt 46891439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 581
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
Q  522 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 581  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
T  18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 581
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
Q  552 gccgctatttcacaatattttgcactaaat 581  Q
    ||||||||||||||||||||||||||||||    
T  35522131 gccgctatttcacaatattttgcactaaat 35522102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 7349495 - 7349565
Alignment:
Q  16 acttgattctgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatgcg 86  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7349495 acttgattatgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatgcg 7349565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 54934085 - 54934017
Alignment:
Q  16 acttgattctgctatataatggtttagcacagtaatcttcatatgcgttaatttttacttatacacatg 84  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  54934085 actttattctgctatatgatggtttagtacagtaatcttcatatgcgttaatttttacttatatacatg 54934017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 361 - 466
Target Start/End: Complemental strand, 48232219 - 48232114
Alignment:
Q  361 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 460  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48232219 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48232120  T
Q  461 ttatac 466  Q
    ||||||    
T  48232119 ttatac 48232114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 361 - 466
Target Start/End: Complemental strand, 48237259 - 48237154
Alignment:
Q  361 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 460  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48237259 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48237160  T
Q  461 ttatac 466  Q
    ||||||    
T  48237159 ttatac 48237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 48232273 - 48232222
Alignment:
Q  243 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg 293  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  48232273 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg 48232222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 48237313 - 48237262
Alignment:
Q  243 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg 293  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  48237313 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg 48237262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
Q  536 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 581  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
T  26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 522 - 570
Target Start/End: Complemental strand, 28727003 - 28726955
Alignment:
Q  522 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatatt 570  Q
    |||||||||||||| ||||| |||||  ||||| |||||||||||||||    
T  28727003 gttcaaattccgctatgcaacagtgccatagccactatttcacaatatt 28726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University