View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13837_high_5 (Length: 420)
Name: NF13837_high_5
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 404
Target Start/End: Original strand, 9088213 - 9088607
Alignment:
| Q |
7 |
agaaatgaaaaaccaaagatcagcgtcgtnnnnnnntaacggataactaatgaattttatcacaacagatgaatttgaatttataactgatagcgaataa |
106 |
Q |
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| T |
9088213 |
agaaaagaaaaaccaaagatcagtgtcgtaaaaaaatatcggataactgataaattctatcgcaatgaatgaatttgaatttataactga---cgaataa |
9088309 |
T |
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| Q |
107 |
gataatccataacaaataaaattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctccattttca |
206 |
Q |
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| T |
9088310 |
tataatcgataacagataagattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctccattttca |
9088409 |
T |
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| Q |
207 |
acattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccatctcgtacttcccaactctagtacgaggtcttggtggtaccttat |
306 |
Q |
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| T |
9088410 |
acattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccatctcgtacttcccaactctagtacgaggtcttggtggtaccttat |
9088509 |
T |
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| Q |
307 |
tactcatcatgtacgacaattccacaaaatcaatgttcaaaacaaacacctttattttcagttaagtttcgttacttaaacgtacttgacacaaattc |
404 |
Q |
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| T |
9088510 |
tactcatcatgtacaacaattccacaaaatcaatgttcaaaacaaacacctttattttcagttaagtttcgttacttaaacgtacttgacacaaattc |
9088607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 9079436 - 9079754
Alignment:
| Q |
7 |
agaaatgaaaaaccaaagatcagcgtcgtnnnnnnntaacggataactaatgaattttatcacaacagatgaatttgaatttataactgatagcgaataa |
106 |
Q |
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| T |
9079436 |
agaaaagaaaaaccaaagatcagtgtcgtaaaaaaatatcggataactgataaattctatcgcaatgaatgaatttgaatttataactga---cgaataa |
9079532 |
T |
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| Q |
107 |
gataatccataacaaataaaattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctccattttca |
206 |
Q |
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| T |
9079533 |
tataatcgataacagataagattgtacctgatccatcatattgtgtttgagtacatgattacgatcaagaattttgatggcaacataatctccattttca |
9079632 |
T |
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| Q |
207 |
acattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccatctcgtacttcccaactctagtacgaggtcttggtggtaccttat |
306 |
Q |
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| T |
9079633 |
acattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcccagctcatacttccctactctagtacgtggtgcttgtgttaccttat |
9079732 |
T |
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| Q |
307 |
tactcatcatgtacgacaattc |
328 |
Q |
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| T |
9079733 |
tactcatcatgtacaacaattc |
9079754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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