View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13837_low_10 (Length: 370)
Name: NF13837_low_10
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 48664491 - 48664850
Alignment:
| Q |
1 |
atgaaatagttaaaattttacaagaaaaacagcatgttgttggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48664491 |
atgaaatagttaaaattttacaagaaaaacagcatgttgttggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaat |
48664590 |
T |
|
| Q |
101 |
agctgtgtctgatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48664591 |
agctgtgtctgatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccga |
48664690 |
T |
|
| Q |
201 |
gctatatttcaaaggatgaaaaattatacagttgagtctgcaaaatcctcttctcttttatattgccattgaagaaatatacttttctacttttatatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
48664691 |
gctatatttcaaaggatgaaaaattatacagttgagtctgcaaaatcctcttctcttttatattaccattgaagaaatatatttttctacttttatatat |
48664790 |
T |
|
| Q |
301 |
tatatagcctcaatatgaaagcttgattccaagaaaatcgcatcatcaggtaaagatatt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
48664791 |
tatatagcctcaatatgaaagcttgattccaagaaaatagcaccatcaggtaaatatatt |
48664850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 15869108 - 15869300
Alignment:
| Q |
37 |
ttgttggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgc |
136 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| || |||||||| ||||| || |||||||| ||||| |||||||||| ||||| |||||| |||| |
|
|
| T |
15869108 |
ttgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaattgctgttgctgatgctactgatgctgcaagaggtgc |
15869207 |
T |
|
| Q |
137 |
tgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccgagctatatttcaaaggatgaaaaattatac |
229 |
Q |
| |
|
| |||||||||||||||| || ||||| || |||||||| ||||| ||||| ||||| || ||||||| || ||||| ||||| || ||||| |
|
|
| T |
15869208 |
ttctgatatagtcttaacagaacctggtttgagtgttatcatcagtgctgtcttaacaagtagagctatcttccaaagaatgaagaactatac |
15869300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 21980602 - 21980457
Alignment:
| Q |
45 |
atgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgctgata |
144 |
Q |
| |
|
||||| |||||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| ||||||| || ||||||||||| ||||| | || | |
|
|
| T |
21980602 |
atgaccggagatggtgtaaacgatgcaccagcattgaagaaggcagacattggtattgctgttgctgatgcaactgatgccgcaaggagtgcctcagaca |
21980503 |
T |
|
| Q |
145 |
tagtcttaactgagcctggcttaagtgttattatcagcgctgtgtt |
190 |
Q |
| |
|
| ||||| |||||||| || || ||||| ||| | || |||||||| |
|
|
| T |
21980502 |
ttgtcttgactgagccgggtttgagtgtgattgtgagtgctgtgtt |
21980457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 1462619 - 1462766
Alignment:
| Q |
41 |
tggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgct |
140 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| | ||||||||||| |||||||| ||||| |||||||||||||||| || ||||||||| || |
|
|
| T |
1462619 |
tggaatgactggagatggtgtaaatgacgccccggcgctaaagaaagcagatattggaattgctgttgctgatgctacagatgctgctagaagtgcttct |
1462718 |
T |
|
| Q |
141 |
gatatagtcttaactgagcctggcttaagtgttattatcagcgctgtg |
188 |
Q |
| |
|
||||| ||| | ||||| ||||| | ||||| |||||||| |||||| |
|
|
| T |
1462719 |
gatattgtcctcactgaacctggtctcagtgtcattatcagtgctgtg |
1462766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 1497021 - 1496833
Alignment:
| Q |
41 |
tggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgct |
140 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| || || || |||||||| || || ||||| || || |||||||||||||||| || ||||||||| || |
|
|
| T |
1497021 |
tggaatgacaggagatggtgtaaacgatgctcctgcgttaaagaaagccgatatcggaattgcagttgctgatgctacagatgctgctagaagtgcttct |
1496922 |
T |
|
| Q |
141 |
gatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccgagctatatttcaaaggatgaaaaattatac |
229 |
Q |
| |
|
||||| ||| | ||||| || || | ||||| ||||| ||||||||| | || |||||||| || |||||||||||||| |||||||| |
|
|
| T |
1496921 |
gatattgtcctcactgaacccggtcttagtgtcattattagcgctgtgctcaccagccgagcgatttttcaaaggatgaagaattatac |
1496833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 26790368 - 26790508
Alignment:
| Q |
41 |
tggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgct |
140 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || ||| | |||||||||||||||||||| || || ||||||| |||||||| || ||||||||| || |
|
|
| T |
26790368 |
tggaatgactggagatggtgtaaacgatgcacctgcactaaagaaagcagacattggaattgcggttgctgatgccacagatgctgctagaagtgcttct |
26790467 |
T |
|
| Q |
141 |
gatatagtcttaactgagcctggcttaagtgttattatcag |
181 |
Q |
| |
|
||||| ||| | ||||| ||||| | ||||| |||||||| |
|
|
| T |
26790468 |
gatattgtcctcactgaacctggtcttagtgtcattatcag |
26790508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 44532841 - 44533028
Alignment:
| Q |
45 |
atgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgctgata |
144 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| | ||||| ||||||||||| ||||| || | |||||||| ||||| || | ||||| | |||| |
|
|
| T |
44532841 |
atgactggtgatggagtgaatgatgcaccggctctcaagaaggcagacattggtatagccgttgcagatgctaccgatgcagctcgtagtgcatccgata |
44532940 |
T |
|
| Q |
145 |
tagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccgagctatatttcaaaggatgaaaaattatacagt |
232 |
Q |
| |
|
| || || || || |||||| | ||||||||||| || ||||| || || ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
44532941 |
ttgttttgacagaacctggcctcagtgttattataagtgctgttttgaccagccgagctatctttcaaagaatgaaaaattatacagt |
44533028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 53075493 - 53075363
Alignment:
| Q |
93 |
attggaatagctgtgtctgatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaa |
192 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||| ||||| |||| || ||||| || || ||||| || |||||||| ||||| || || |||| |
|
|
| T |
53075493 |
attggaatcgctgttgctgatgctacagatgctgcaagaggtgcttctgacattgtcttgacagaacctggattgagtgttatcatcagtgcagtcttaa |
53075394 |
T |
|
| Q |
193 |
ctagccgagctatatttcaaaggatgaaaaa |
223 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| |
|
|
| T |
53075393 |
ctagtagagctatttttcaaagaatgaaaaa |
53075363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 48437013 - 48436827
Alignment:
| Q |
37 |
ttgttggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgc |
136 |
Q |
| |
|
||||||| |||||||| ||||| || |||||||| || ||| ||||||| |||||||| || || || || ||||| || ||||| ||||||||||| |
|
|
| T |
48437013 |
ttgttggtatgactggtgatggtgtgaatgatgcacctgcactgaagaaggcagacatcggtattgcagttgacgatgcaactgatgctgcaagaagtgc |
48436914 |
T |
|
| Q |
137 |
tgctgatatagtcttaactgagcctggcttaagtgttattatcagcgctgtgttaactagccgagctatatttcaaaggatgaaaaa |
223 |
Q |
| |
|
| |||| || || || || ||||| || ||||||| ||| | || || |||||||||||| |||| || || |||||||||||||| |
|
|
| T |
48436913 |
ttctgacattgttttgacagagccaggactaagtgtgattgtgagtgcggtgttaactagcagagccatcttccaaaggatgaaaaa |
48436827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 50276209 - 50276288
Alignment:
| Q |
81 |
aagaaagcagacattggaatagctgtgtctgatgctacagatgccgcaagaagtgctgctgatatagtcttaactgagcc |
160 |
Q |
| |
|
|||| |||||| |||||||| ||||| |||||||||||||||| || ||| ||||| ||||||| ||| | |||||||| |
|
|
| T |
50276209 |
aagagagcagatattggaattgctgttgctgatgctacagatgctgctagaggtgcttctgatattgtccttactgagcc |
50276288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University