View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13837_low_15 (Length: 306)
Name: NF13837_low_15
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 1842814 - 1842532
Alignment:
| Q |
17 |
agaataattacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaaatcctttgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842814 |
agaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcctttgt |
1842715 |
T |
|
| Q |
117 |
aaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattttagtgctttcagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842714 |
aaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatattttagtgctttcagt |
1842615 |
T |
|
| Q |
217 |
t---gagtcttctcttgttgagagtttttgtcttaaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
296 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842614 |
tgaggagtcttctcttgttgagagtttttgttttaaaatcagaccaccattctgctcaaagaatttctctttcattttgatga |
1842532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 1868414 - 1868220
Alignment:
| Q |
26 |
acctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaaatcctttgtaaacagtac |
125 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
1868414 |
acctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtac |
1868315 |
T |
|
| Q |
126 |
caaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattttagtgctttcagttgag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
1868314 |
caaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagcactttgagttgag |
1868220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 1868195 - 1868117
Alignment:
| Q |
218 |
gagtcttctcttgttgagagtttttgtcttaaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
296 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1868195 |
gagtcttctcttgttgagagtttttgtttcaaaatcaaaccaccattctgttcgaagaatttctctttcattttgatga |
1868117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 9170959 - 9171053
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattt |
203 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||| | || ||| ||| ||||||||| || || || | |||| ||||||||||| |
|
|
| T |
9170959 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatattt |
9171053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 9178941 - 9179035
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattt |
203 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||| | || ||| ||| ||||||||| || || || | |||| ||||||||||| |
|
|
| T |
9178941 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatattt |
9179035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 9156221 - 9156286
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggc |
174 |
Q |
| |
|
||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| ||| ||||||||| |
|
|
| T |
9156221 |
tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggtggc |
9156286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University