View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13837_low_16 (Length: 300)
Name: NF13837_low_16
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 15079190 - 15078908
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079190 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
15079091 |
T |
|
| Q |
101 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||| | ||||||||||||||||||||| |
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| T |
15079090 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgacaaatgttgtaaa |
15078991 |
T |
|
| Q |
201 |
acatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatc |
283 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||| |||||| |
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| T |
15078990 |
acatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatc |
15078908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 93 - 300
Target Start/End: Complemental strand, 15079398 - 15079191
Alignment:
| Q |
93 |
ttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaat |
192 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079398 |
ttcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaat |
15079299 |
T |
|
| Q |
193 |
gttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
15079298 |
gttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctacatgaat |
15079199 |
T |
|
| Q |
293 |
atgaaact |
300 |
Q |
| |
|
|||||||| |
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|
| T |
15079198 |
atgaaact |
15079191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15078890 - 15078838
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
53 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
15078890 |
tttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
15078838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18664638 - 18664920
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664638 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
18664737 |
T |
|
| Q |
101 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | ||||||||||||||||||||| |
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| T |
18664738 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacaaatgttgtaaa |
18664837 |
T |
|
| Q |
201 |
acatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatc |
283 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||| |||||| |
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|
| T |
18664838 |
acatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatc |
18664920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 94 - 300
Target Start/End: Original strand, 18664431 - 18664637
Alignment:
| Q |
94 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
193 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664431 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
18664530 |
T |
|
| Q |
194 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaata |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664531 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaata |
18664630 |
T |
|
| Q |
294 |
tgaaact |
300 |
Q |
| |
|
||||||| |
|
|
| T |
18664631 |
tgaaact |
18664637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18664938 - 18664990
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
53 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
18664938 |
tttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
18664990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 103 - 283
Target Start/End: Original strand, 7534989 - 7535169
Alignment:
| Q |
103 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaac |
202 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| |||||| || ||||||| ||||||||| ||| | |
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| T |
7534989 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7535088 |
T |
|
| Q |
203 |
atatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatc |
283 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | |||||| |
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|
| T |
7535089 |
atgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatc |
7535169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 297
Target Start/End: Original strand, 7449451 - 7449645
Alignment:
| Q |
103 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaac |
202 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| |||||| || ||||||| ||||||||| ||| | |
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|
| T |
7449451 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7449550 |
T |
|
| Q |
203 |
atatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaatatgaa |
297 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||| |||||||||| | |||||| ||| ||||||||| |
|
|
| T |
7449551 |
atgtctgtgtacaactcttgcctcctcaagagacttagccttcccacaaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaa |
7449645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 27578260 - 27578126
Alignment:
| Q |
104 |
gaacacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaaca |
203 |
Q |
| |
|
|||||| || ||| ||||| ||||||||||||| | ||||||||||||| | ||| ||||||||| |||| ||| |||||| ||| ||||| ||| || |
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|
| T |
27578260 |
gaacaccttaactacatcaactacagaaccacaattaaaatacatctcccaaattatattgcatgttctgaatttgagaggtaacacatgtttcaaagca |
27578161 |
T |
|
| Q |
204 |
tatctgtgtacaacttttgcctcttcaagagactt |
238 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
27578160 |
tatctatgtacgactttttcctcttcaagagactt |
27578126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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