View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13837_low_18 (Length: 268)

Name: NF13837_low_18
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13837_low_18
NF13837_low_18
[»] chr1 (3 HSPs)
chr1 (94-235)||(45511709-45511854)
chr1 (205-248)||(5328037-5328080)
chr1 (205-247)||(5328685-5328727)
[»] chr7 (4 HSPs)
chr7 (204-259)||(37623928-37623983)
chr7 (205-245)||(37622827-37622867)
chr7 (205-254)||(7847114-7847163)
chr7 (205-249)||(44520328-44520372)
[»] chr8 (4 HSPs)
chr8 (205-259)||(39069079-39069133)
chr8 (205-254)||(39070194-39070243)
chr8 (205-247)||(11690853-11690895)
chr8 (205-249)||(42737352-42737396)
[»] chr2 (10 HSPs)
chr2 (207-259)||(518289-518341)
chr2 (205-259)||(27478902-27478956)
chr2 (205-247)||(519631-519673)
chr2 (205-254)||(24460563-24460612)
chr2 (205-252)||(10454505-10454552)
chr2 (208-254)||(20606110-20606156)
chr2 (208-254)||(21178443-21178489)
chr2 (208-246)||(27477848-27477886)
chr2 (217-254)||(20919225-20919262)
chr2 (205-249)||(7575455-7575499)
[»] chr3 (2 HSPs)
chr3 (205-254)||(54410584-54410633)
chr3 (205-259)||(55136397-55136451)
[»] chr4 (2 HSPs)
chr4 (205-254)||(47649531-47649580)
chr4 (205-249)||(13861754-13861798)
[»] chr5 (2 HSPs)
chr5 (205-249)||(31547661-31547705)
chr5 (205-249)||(37272550-37272594)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 45511709 - 45511854
Alignment:
Q  94 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttgagtcttgatacatcatcttaaaaggacctaaacaggat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45511709 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttcagtcttgatacatcatcttaaaaggacctaaacaggat 45511808  T
Q  194 t----nnnnnnnnngaagataaaagactaatgtgttacaaataaat 235  Q
    |             ||||||||||||||||||||||||||||||||    
T  45511809 taaaaaaaaaagaagaagataaaagactaatgtgttacaaataaat 45511854  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 5328080 - 5328037
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacc 248  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  5328080 aagataaaagactaaagtgttacaaataaataagataaatgacc 5328037  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 5328685 - 5328727
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgac 247  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  5328685 aagataaaagactaaagtgttacaagtaaataagataaatgac 5328727  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 37623928 - 37623983
Alignment:
Q  204 gaagataaaagactaatgtgttacaaataaataaaataaatgacctttagtattat 259  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  37623928 gaagataaaagactaatgtgttacaaataaataagataaaagacctttagtgttat 37623983  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 37622867 - 37622827
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatg 245  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  37622867 aagataaaggactaatgtgttacaaataaataagataaatg 37622827  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 7847163 - 7847114
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    |||||||||||| ||||| |||||||||||||| ||| ||||| ||||||    
T  7847163 aagataaaagaccaatgtattacaaataaataagatagatgacttttagt 7847114  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 44520372 - 44520328
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||    
T  44520372 aagataaaagaccaaaatgttacaaataaataagataaatgacct 44520328  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 39069133 - 39069079
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtattat 259  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  39069133 aagataaaggactaatgtgttacaaataaataagataaatgacctttagtgttat 39069079  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 39070194 - 39070243
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    |||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  39070194 aagataaaggactaatgtgttacaaataaataaaataaaggacatttagt 39070243  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 11690895 - 11690853
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgac 247  Q
    |||||||||||| ||| |||||||||||||||| |||||||||    
T  11690895 aagataaaagaccaatatgttacaaataaataagataaatgac 11690853  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 42737352 - 42737396
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||    
T  42737352 aagataaaggactaaaatgttacaaataaataagataaatgacct 42737396  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 518341 - 518289
Alignment:
Q  207 gataaaagactaatgtgttacaaataaataaaataaatgacctttagtattat 259  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  518341 gataaaggactaatgtgttacaaataaataagataaatgacctttagtgttat 518289  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 27478902 - 27478956
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtattat 259  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  27478902 aagataaaggactaatgtgttacaaataaataagataaaggacctttagtgttat 27478956  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 519631 - 519673
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgac 247  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  519631 aagataaaggactaatgtgttacaaataaataagataaatgac 519673  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 24460563 - 24460612
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    |||||||| || ||||||||||||||||||||| ||||| ||||||||||    
T  24460563 aagataaaggattaatgtgttacaaataaataagataaaggacctttagt 24460612  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 10454552 - 10454505
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 252  Q
    |||||||| |||||||||||||||||||||||| ||||| ||| ||||    
T  10454552 aagataaaggactaatgtgttacaaataaataagataaaagacattta 10454505  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 20606110 - 20606156
Alignment:
Q  208 ataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    ||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  20606110 ataaaggactaatgtgttacaaataaataagataaaggacatttagt 20606156  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 21178443 - 21178489
Alignment:
Q  208 ataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    ||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  21178443 ataaaggactaatgtgttacaaataaataagataaaggacatttagt 21178489  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 27477886 - 27477848
Alignment:
Q  208 ataaaagactaatgtgttacaaataaataaaataaatga 246  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  27477886 ataaaggactaatgtgttacaaataaataagataaatga 27477848  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 20919262 - 20919225
Alignment:
Q  217 taatgtgttacaaataaataaaataaatgacctttagt 254  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  20919262 taatgtgttacaaataaataagataaatgacatttagt 20919225  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 7575455 - 7575499
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||| |||||| ||||||||||||||||| ||||| |||||    
T  7575455 aagataaaggactaaagtgttacaaataaataagataaaagacct 7575499  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 54410584 - 54410633
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  54410584 aagataaaggactaatgtgttacaaataaataagataaatgacatttagt 54410633  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 55136397 - 55136451
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtattat 259  Q
    |||||||| ||||||||||||| |||||||||| ||||| |||||||||| ||||    
T  55136397 aagataaaggactaatgtgttataaataaataagataaaggacctttagtgttat 55136451  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 47649580 - 47649531
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 254  Q
    |||||||| |||||||||||| ||||||||||||||||| ||| ||||||    
T  47649580 aagataaaggactaatgtgttgcaaataaataaaataaaggacatttagt 47649531  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 13861754 - 13861798
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||||||| || ||||||||||||||||||||||| |||||    
T  13861754 aagataaaagaccaaagtgttacaaataaataaaataaaggacct 13861798  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 31547705 - 31547661
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||||||| || ||||||||||||||||| ||||| |||||    
T  31547705 aagataaaagaccaaagtgttacaaataaataagataaaggacct 31547661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 37272550 - 37272594
Alignment:
Q  205 aagataaaagactaatgtgttacaaataaataaaataaatgacct 249  Q
    |||||||| ||| || ||||||||||||||||| |||||||||||    
T  37272550 aagataaaggaccaaagtgttacaaataaataagataaatgacct 37272594  T

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