View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13837_low_22 (Length: 238)
Name: NF13837_low_22
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18664638 - 18664851
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664638 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
18664737 |
T |
|
| Q |
101 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18664738 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacaaatgttgtaaa |
18664837 |
T |
|
| Q |
201 |
acatatatgtgtac |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
18664838 |
acatatatgtgtac |
18664851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 18664431 - 18664551
Alignment:
| Q |
94 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg |
193 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| ||| |
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| T |
18664431 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
18664530 |
T |
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| Q |
194 |
ttgtaaaacatatatgtgtac |
214 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
18664531 |
ttgtaaaacatatctgtgtac |
18664551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18664938 - 18664990
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
53 |
Q |
| |
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|||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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| T |
18664938 |
tttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
18664990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15079190 - 15078977
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079190 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagtcatgttcatgtt |
15079091 |
T |
|
| Q |
101 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
15079090 |
cctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgacaaatgttgtaaa |
15078991 |
T |
|
| Q |
201 |
acatatatgtgtac |
214 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
15078990 |
acatatctgtgtac |
15078977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 15079398 - 15079277
Alignment:
| Q |
93 |
ttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagat |
192 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| || |
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|
| T |
15079398 |
ttcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaat |
15079299 |
T |
|
| Q |
193 |
gttgtaaaacatatatgtgtac |
214 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
15079298 |
gttgtaaaacatatctgtgtac |
15079277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15078890 - 15078838
Alignment:
| Q |
1 |
tttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
53 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
15078890 |
tttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
15078838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 7449451 - 7449509
Alignment:
| Q |
103 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattcta |
161 |
Q |
| |
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||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| |
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|
| T |
7449451 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactcta |
7449509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 7534989 - 7535047
Alignment:
| Q |
103 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattcta |
161 |
Q |
| |
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||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| |
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| T |
7534989 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactcta |
7535047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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