View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13837_low_3 (Length: 697)

Name: NF13837_low_3
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13837_low_3
NF13837_low_3
[»] chr5 (1 HSPs)
chr5 (6-683)||(5109413-5110113)


Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 6 - 683
Target Start/End: Complemental strand, 5110113 - 5109413
Alignment:
Q  6 aggatcacagaaagaagcgtgcgtacgaattttgttttgtacagtttacacaccaactcactaattaattttttattctcaatagttataattttaa--- 102  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||       
T  5110113 aggaccacagaaagaagcgtgtgtaagaattttgttttgtacagtttacacaccaacttactaattaattttttattctcaatagttatagttttaaata 5110014  T
Q  103 ------------cctccaaatatttatagagatagtctagtgttcggtcggaagataagcaagtctcctgatcaccnnnnnnnnntataaacgaaactgt 190  Q
                ||||||||||| ||||||||| || |||||||||||||||||||||  |||| | |||||||||         ||||||||| |||||    
T  5110013 attttgtcttaacctccaaatatctatagagattgtatagtgttcggtcggaagataaataagtttactgatcaccaaaaaaaa-tataaacgagactgt 5109915  T
Q  191 ttaagag---------caaaaatttgaatttaaatactctcgattgattcaattttagttgaattttattaatcatttgagtttaattatttagtcattt 281  Q
    ||||||          ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| || | ||    
T  5109914 ttaagaattgttccaacaaaaatttgaatttaaatactctcgattgattcaattttaattaaattttattaatcatttgggtttaattatttggttactt 5109815  T
Q  282 gtaaaatgttttcttaataaagaaaacaattaccatgtttagaagaagtgaaggacacaagtcaaacaaaacattatttaaagcaagagtgttgaatttg 381  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5109814 gcaaaatgttttcttaataaagaaaacaattaccatgtttagaaggagtgaaggacacaagtcaaacaaaacattatttaaagcaagagtgttgaatttg 5109715  T
Q  382 atattagctactatataaaattgaggtttgtagaagaaatgacaaagtagacaaacatttcaacaaaagtaaggaaatggtattggcgttaggccaccgt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5109714 atattagctactatataaaattgaggtttgtagaagaaatgacaaagtagacaaacatttcaacaaaagtaaggaaatggtattggcgttaggccaccgt 5109615  T
Q  482 ctctgattaattctcactcttttacaatttctttccatgataataaactaaccatggttaacaaacnnnnnnnagaaaggtgaaaaataaattgaggtac 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  5109614 ctctgattaattctcactcttttacaatttctttccatgataataaactaaccatggttaacaaactttttttagaaaggtgaaaaataaattgaggtac 5109515  T
Q  582 annnnnnnccatgttatgcttacgtatcgtggacctagttaaggtatgaaagtgtctttttgacaaggtcctatgaaattgttacagatctatacaaaaa 681  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5109514 atttttttccatgttatgcttacgtatcgtggacctagttaaggtatgaaagtgtctttttgacaaggtcctatgaaattgttacagatctatacaaaaa 5109415  T
Q  682 ct 683  Q
    ||    
T  5109414 ct 5109413  T

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