View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13837_low_4 (Length: 658)

Name: NF13837_low_4
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13837_low_4
NF13837_low_4
[»] chr1 (22 HSPs)
chr1 (20-645)||(39395691-39396305)
chr1 (230-306)||(10324937-10325013)
chr1 (230-307)||(1514353-1514430)
chr1 (217-290)||(43018461-43018534)
chr1 (230-286)||(3515828-3515884)
chr1 (219-282)||(33693020-33693083)
chr1 (247-309)||(3416107-3416169)
chr1 (215-287)||(6574176-6574248)
chr1 (267-307)||(27500332-27500372)
chr1 (230-286)||(32370050-32370106)
chr1 (230-273)||(37522942-37522985)
chr1 (267-306)||(52263646-52263685)
chr1 (224-302)||(4554912-4554989)
chr1 (230-284)||(28083909-28083963)
chr1 (250-307)||(213535-213592)
chr1 (230-306)||(48549013-48549087)
chr1 (217-290)||(52013493-52013566)
chr1 (230-306)||(6041485-6041560)
chr1 (250-290)||(17284126-17284166)
chr1 (230-290)||(20026179-20026239)
chr1 (198-290)||(28287351-28287442)
chr1 (230-286)||(44801595-44801651)
[»] chr6 (11 HSPs)
chr6 (215-290)||(30926793-30926868)
chr6 (230-306)||(1485145-1485221)
chr6 (215-306)||(31305846-31305937)
chr6 (230-307)||(852542-852619)
chr6 (230-290)||(34898705-34898766)
chr6 (224-307)||(9505774-9505857)
chr6 (230-287)||(2234525-2234582)
chr6 (233-290)||(10874507-10874564)
chr6 (250-287)||(34027435-34027472)
chr6 (233-290)||(34063325-34063382)
chr6 (217-289)||(25388075-25388146)
[»] chr8 (11 HSPs)
chr8 (224-290)||(4336640-4336706)
chr8 (228-307)||(16972062-16972141)
chr8 (247-286)||(5893234-5893273)
chr8 (534-581)||(17899465-17899511)
chr8 (228-306)||(30098918-30098994)
chr8 (241-291)||(3206078-3206128)
chr8 (228-306)||(13384653-13384731)
chr8 (317-403)||(18355758-18355843)
chr8 (228-306)||(26100145-26100223)
chr8 (247-307)||(32736489-32736549)
chr8 (250-306)||(34478193-34478249)
[»] chr2 (11 HSPs)
chr2 (212-306)||(44439246-44439340)
chr2 (231-307)||(13912798-13912874)
chr2 (224-307)||(33961979-33962062)
chr2 (215-290)||(3476444-3476519)
chr2 (215-306)||(33502847-33502938)
chr2 (230-291)||(10618955-10619016)
chr2 (230-287)||(42982554-42982611)
chr2 (218-280)||(7630191-7630253)
chr2 (215-290)||(7629866-7629939)
chr2 (214-290)||(36374311-36374386)
chr2 (250-306)||(42741007-42741063)
[»] chr7 (7 HSPs)
chr7 (230-291)||(30182310-30182371)
chr7 (230-307)||(38123664-38123741)
chr7 (27-110)||(44519727-44519810)
chr7 (230-307)||(40561756-40561833)
chr7 (230-287)||(27571872-27571929)
chr7 (250-399)||(40491608-40491750)
chr7 (255-287)||(22310477-22310509)
[»] chr4 (13 HSPs)
chr4 (230-307)||(33843987-33844064)
chr4 (239-306)||(4243406-4243473)
chr4 (219-306)||(10185193-10185280)
chr4 (217-286)||(2206362-2206431)
chr4 (215-307)||(32818368-32818459)
chr4 (239-291)||(33843702-33843754)
chr4 (230-290)||(37439155-37439215)
chr4 (230-262)||(48045744-48045776)
chr4 (224-275)||(8330120-8330171)
chr4 (247-306)||(47596300-47596359)
chr4 (250-307)||(41751270-41751327)
chr4 (230-306)||(9064241-9064317)
chr4 (233-285)||(20712664-20712715)
[»] chr3 (17 HSPs)
chr3 (228-290)||(30301013-30301076)
chr3 (230-307)||(27266792-27266869)
chr3 (230-307)||(35264409-35264486)
chr3 (230-306)||(3776532-3776608)
chr3 (217-281)||(44489235-44489299)
chr3 (233-272)||(829906-829945)
chr3 (228-307)||(36302191-36302270)
chr3 (245-306)||(46853533-46853594)
chr3 (235-290)||(44958621-44958676)
chr3 (215-277)||(20484020-20484082)
chr3 (240-290)||(23187865-23187915)
chr3 (234-303)||(35058375-35058445)
chr3 (253-290)||(37703132-37703169)
chr3 (230-289)||(3845129-3845189)
chr3 (230-290)||(25359589-25359649)
chr3 (232-300)||(38332559-38332627)
chr3 (317-401)||(53567968-53568050)
[»] chr5 (12 HSPs)
chr5 (215-307)||(33608499-33608591)
chr5 (216-265)||(42724403-42724452)
chr5 (202-286)||(3043040-3043124)
chr5 (224-303)||(37877062-37877141)
chr5 (215-307)||(10898718-10898808)
chr5 (217-286)||(11132804-11132873)
chr5 (230-291)||(24306110-24306171)
chr5 (230-291)||(24367145-24367206)
chr5 (280-386)||(29922956-29923059)
chr5 (230-307)||(36639947-36640024)
chr5 (215-307)||(10859836-10859928)
chr5 (272-336)||(14299850-14299913)
[»] scaffold0283 (1 HSPs)
scaffold0283 (216-265)||(18377-18426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (255-287)||(14132-14164)


Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 20 - 645
Target Start/End: Original strand, 39395691 - 39396305
Alignment:
Q  20 ctaagcttgttagacttcccagtatcagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39395691 ctaagcttgttagacttcccagtatcagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatt 39395790  T
Q  120 tccttcttctttgtcaaccgcgctattcattcgtataatcatttatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaat 219  Q
    ||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39395791 tccttc---tttgtcaaccgcgctattcattcgtataatcatgtatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaat 39395887  T
Q  220 tgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatggaatgaatatat 319  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39395888 tgaatctaatttgaatctaaaaattggagttttttattctagaattaatttttacactcaaatttattgttcgactcatttttacatggaatgaatatat 39395987  T
Q  320 ccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatttttaccactaacacacacta 419  Q
    ||||||||||||||| ||| |||||||||||||| ||      | |||  ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39395988 ccaaatataaattac-tttaccttcaactcccttata-----ttttca--tttagataatcaattcactcgaaatcaatttttaccactaacacacacta 39396079  T
Q  420 agtttgatgaaatcatggtggattctgggattcttttgaagctcgaagtgtaatttttgctaaatttgcggcgacacattgcactaagtttgacgaaatc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39396080 agtttgatgaaatcatggtggattctgggattcttttgaagctcgaagtgtaatttttgctaaatttgcggcgacacattgcactaagtttgacgaaatc 39396179  T
Q  520 aatgtggtaattgagattttgttgaagtttcaaagtgcagttttttgctaaaatcacggtggcacaacttaaatattccaaacacacaactccaatgttt 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39396180 aatgtggtaattgagattttgttgaagtttcaaagtgcagttttttgctaaaatcacggtggcacaacttaaatattccaaacacactactccaatgttt 39396279  T
Q  620 ggtattcctttctcacgtccctatgc 645  Q
    ||||||||||||||||||||||||||    
T  39396280 ggtattcctttctcacgtccctatgc 39396305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 10325013 - 10324937
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||| ||||||||| || |||| |||||| |||| ||||||||||||||||||||||||  ||||| ||||||||    
T  10325013 ttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 1514353 - 1514430
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||||| | ||| || |||||||| || |||| |||||||||| |||||||||||||  |||||||||||||||    
T  1514353 ttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatg 1514430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 43018461 - 43018534
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||| |||||  ||||||||||| ||||| ||||| ||||||||||| || |||| ||||||||||||||||    
T  43018461 aattgattctaacatgaagctagaatttggaatttttaattctagaattgatgtttagactcaaatttattgtt 43018534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 3515828 - 3515884
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    |||||||||||||||| || |||| ||||||||||| ||||||||||||||| ||||    
T  3515828 ttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattat 3515884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 33693020 - 33693083
Alignment:
Q  219 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaat 282  Q
    |||| ||||| |||||||||||||||| || |||| |||||| |||| ||||||||||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 3416107 - 3416169
Alignment:
Q  247 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatgga 309  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||| ||||| ||||| |||||    
T  3416107 agttttttattttagaattgatttttacacacaaatttatagtttaactcaattttatatgga 3416169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 6574176 - 6574248
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 287  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||| ||||||||||||| | |||||||||||||    
T  6574176 agaattgattctaactttaagctaaaaattagagcttttgattgtagaattaattttcagactcaaatttatt 6574248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 27500332 - 27500372
Alignment:
Q  267 atttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  27500332 atttttacactcaaatttattgttcaactcatttttacatg 27500372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 32370106 - 32370050
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    |||||| ||||| ||| | |||||||||||||||||| ||||||||| |||||||||    
T  32370106 ttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttat 32370050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 37522985 - 37522942
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaattttta 273  Q
    |||||||||||| |||||||||||||| |||||||| |||||||    
T  37522985 ttgaagctagaagttggagttttttatcctagaattgattttta 37522942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 52263685 - 52263646
Alignment:
Q  267 atttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  52263685 atttttacactcaaatttattgtttaactcagttttacat 52263646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 4554912 - 4554989
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttt 302  Q
    |||||||||||| ||||  |||||||||||| || || | || |||||||  |||||||||||||||||| ||||||||    
T  4554912 tctaatttgaagttagactttggagttttttctt-taaatttgatttttagtctcaaatttattgtttgattcattttt 4554989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 28083963 - 28083909
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaattt 284  Q
    |||||||||||| ||| || |||| |||||| ||||||||||||||| |||||||    
T  28083963 ttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 213592 - 213535
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||| ||||||||||| ||||||| |||||||||| |||||  ||||| |||||||||    
T  213592 ttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttacatg 213535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 48549087 - 48549013
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||||||||||| || || | ||||||||||| ||||||| ||||  ||||||||||  ||||| ||||||||    
T  48549087 ttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacat 48549013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 52013566 - 52013493
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||| ||||| ||||||||| ||| ||  || | | ||||||||||| ||||||||||||||||||| ||||    
T  52013566 aattgattctaacttgaagctaaaaactgtggtctctgattctagaattgatttttacactcaaatttactgtt 52013493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 6041485 - 6041560
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||||||| ||| ||  ||| |||||||||||  |||||| |||| |||||||||||| ||||| ||||||||    
T  6041485 ttgaagctagaatttgaagcctttgattctagaattgttttttagactc-aatttattgtttaactcacttttacat 6041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 17284126 - 17284166
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
T  17284126 ttttgattctaaaattgatttttacactcaaatttattgtt 17284166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 20026239 - 20026179
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||||||||||  || |||| | ||||||||| ||||  ||||||||||||||||||    
T  20026239 ttgaagctagaaattcaagcttttaactctagaattgatttgaacactcaaatttattgtt 20026179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 28287442 - 28287351
Alignment:
Q  198 gttggttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||||||| ||| |||||||  |||| || ||||| || | ||| || |||| ||| ||||||| ||||| ||||||||||||||||||    
T  28287442 gttggttgcttttgagtagaattggttctactt-gaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgtt 28287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 44801595 - 44801651
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    |||||| ||| | ||| |||||||||||||| ||||||||||||| | |||||||||    
T  44801595 ttgaagttaggatttgtagttttttattctaaaattaatttttacgcgcaaatttat 44801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 30926868 - 30926793
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30926868 agaatggattctaacttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgtt 30926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 1485221 - 1485145
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||| ||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  1485221 ttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 1485145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 31305937 - 31305846
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||| ||| ||||| ||||||||| ||||||||| |||| ||||||||||| |||| ||||||||||||||||| |  ||||| ||||||||    
T  31305937 agaactgattctaacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacat 31305846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 852542 - 852619
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||||||||||| || || | ||||||||||| |||||||||| ||||| |||||||| ||||| |||||||||    
T  852542 ttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatg 852619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 34898705 - 34898766
Alignment:
Q  230 ttgaagctagaaattggagtttt-ttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||||    
T  34898705 ttgaagctagaaattagagtttttttattctagaattgattttaacactcgaatttattgtt 34898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 9505774 - 9505857
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||| |||||| |||||||||||| |||| ||||||  ||| ||||||| ||||||||||||||||  || || |||||||||    
T  9505774 tctaacttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatg 9505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 2234525 - 2234582
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 287  Q
    ||||||||| ||| || || |||| ||||||||||| ||||| |||||||||||||||    
T  2234525 ttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaatttatt 2234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 10874507 - 10874564
Alignment:
Q  233 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||| ||||| ||| ||||    
T  10874507 aagctagaaattagagcttttgattctagaattgatttttacattcaaacttagtgtt 10874564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 34027472 - 34027435
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttatt 287  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  34027472 ttttgattctagaattgatttttacactcaaatttatt 34027435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 34063325 - 34063382
Alignment:
Q  233 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||||||||||| || || | ||||||||||||| ||||||| ||||| ||||||||    
T  34063325 aagctagaaattgtaggttctcattctagaattaacttttacaatcaaacttattgtt 34063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 25388075 - 25388146
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgt 289  Q
    |||||| ||||||| ||| | |||||||| ||| ||| ||| ||||||| ||||| |||||||||||||||||    
T  25388075 aattgattctaatt-gaaacaagaaattgaagtctttgattttagaattgattttgacactcaaatttattgt 25388146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 4336706 - 4336640
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||| ||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||    
T  4336706 tctaacttgaagctagaaaattgagctttttattttagaattaatttttacactcaaatttattgtt 4336640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 16972141 - 16972062
Alignment:
Q  228 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||||||||| ||| ||||||| ||| ||||||| ||||||| || |||||||||||||  | ||| |||||||||    
T  16972141 atttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatg 16972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 5893234 - 5893273
Alignment:
Q  247 agttttttattctagaattaatttttacactcaaatttat 286  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  5893234 agttttttattctagaattaattattacacacaaatttat 5893273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 17899511 - 17899465
Alignment:
Q  534 gattttgttgaagtttcaaagtgcagttttttgctaaaatcacggtgg 581  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  17899511 gattttgttgaagtttcaaagtatag-tttttgctaaaatcacggtgg 17899465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 30098918 - 30098994
Alignment:
Q  228 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||||||||| ||| || |||  |||||||||||||||||||||   |||||||| |||| ||||| ||||||||    
T  30098918 atttgaagctagaatttgtagctttcgattctagaattaatttttaca--aaaatttatagtttaactcacttttacat 30098994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 3206078 - 3206128
Alignment:
Q  241 aattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    ||||||||||||||||| || |||| || |||||||| |||||||||||||    
T  3206078 aattggagttttttattataaaattgatctttacacttaaatttattgttt 3206128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 13384731 - 13384653
Alignment:
Q  228 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||||||||| || ||| || |||| ||||||||||| ||||| |||| ||||||||| |||  ||||| ||||||||    
T  13384731 atttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 18355843 - 18355758
Alignment:
Q  317 tatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaattttta 403  Q
    ||||||||||||||| ||||||  || |||  | ||| |||||||| |||||||||| | ||||||||||||  |||||||||||||    
T  18355843 tatccaaatataaatcacttttatctccaagccacttttaatcata-atcaattttacaaaatcaattcactcaaaatcaattttta 18355758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 26100223 - 26100145
Alignment:
Q  228 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||||||| | ||| || |||| |||||| |||| |||||||||| ||||||||| |||  ||||| ||||||||    
T  26100223 atttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacat 26100145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 32736489 - 32736549
Alignment:
Q  247 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||||||||| || ||||||||||||||| ||||||||| |||  | ||| |||||||||    
T  32736489 agttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatg 32736549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 34478249 - 34478193
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||  ||| ||||||||||    
T  34478249 ttttgattttagaattcatttttatactcaaatttattgttcaacttatttttacat 34478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 44439246 - 44439340
Alignment:
Q  212 agaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||||||||| ||||| ||||||||| || |||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  44439246 agaagaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacat 44439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 13912798 - 13912874
Alignment:
Q  231 tgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||    
T  13912798 tgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcatttttacatg 13912874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 33962062 - 33961979
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||| || ||||| ||||||||||||||| |||||| |||| ||||||| ||||||||||||||||  | |||||||||||||    
T  33962062 tctaactttaagcttgaaattggagtttttgattctataattgatttttagactcaaatttattgttcaagtcatttttacatg 33961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 3476519 - 3476444
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||||||||||| ||||||||| |||||| |||||||    
T  3476519 agaattgattctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaatgtattgtt 3476444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 33502938 - 33502847
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||| ||||| |||||||||||| ||  ||||||| | ||||||  | ||| ||||||| ||||||||||||  ||||||||||||||    
T  33502938 agaattgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcatttttacat 33502847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 10619016 - 10618955
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    ||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||| ||||||    
T  10619016 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 10618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 42982554 - 42982611
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 287  Q
    |||||||||||||||| || |||| |||| |||||| |||||||||| ||||||||||    
T  42982554 ttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttatt 42982611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 7630191 - 7630253
Alignment:
Q  218 attgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaa 280  Q
    ||||| |||||| |||||||||| |||| || |||| ||||||||||| |||||| |||||||    
T  7630191 attgattctaatgtgaagctagacattgtagcttttgattctagaattgatttttccactcaa 7630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 7629866 - 7629939
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||| ||||| ||||||||||| |||  || || ||| ||||||||| || |||||||||||||| ||||||    
T  7629866 agaattgattctaacttgaagctagagatt--agcttcttactctagaattgatatttacactcaaattcattgtt 7629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 36374311 - 36374386
Alignment:
Q  214 aagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||||| | ||||||| ||||||| || |||||||||||| || || |||||||| | | ||||||||||||||||    
T  36374311 aagaatttattctaattagaagctaaaatttggagtttttt-ttttataattaattctcaaactcaaatttattgtt 36374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 42741007 - 42741063
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||| ||||||||||| ||||||||||||||||||| |||   ||||| ||||||||    
T  42741007 ttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat 42741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 30182371 - 30182310
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    ||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  30182371 ttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgttt 30182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 38123741 - 38123664
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||||||||||| || || | ||||||||||| |||||||||||||||||||||| |  ||||| |||||||||    
T  38123741 ttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatg 38123664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 44519810 - 44519727
Alignment:
Q  27 tgttagacttcccagtatcagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggtt 110  Q
    ||||||| ||||||||||||||||||||||  ||| ||| || || |||||||||||||||||  |||| || |||||||||||    
T  44519810 tgttagagttcccagtatcagagacagagttcaagatactctttctgctcaccgtaacgaactcatttctctcctctccaggtt 44519727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 40561833 - 40561756
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||| ||||||||| ||||| | | |||||||||||||| ||||||||||| |||||||  ||||| |||||||||    
T  40561833 ttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacatg 40561756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 27571872 - 27571929
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 287  Q
    |||||| |||||||||||| |||| ||||||||||| ||||| |||||||| ||||||    
T  27571872 ttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttatt 27571929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 40491608 - 40491750
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgccttcaactc 349  Q
    |||| ||||||||||| | |||||||| ||||||||  |||| ||||| ||||||     |||||| |||||||| |||||| || ||| ||||||||||    
T  40491608 ttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttac-----atgaatgtatccaaaaataaatcac-tttaccttcaactc 40491701  T
Q  350 ccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatt 399  Q
     ||| || ||| | |||||||||| | ||||||||||||  |||||||||    
T  40491702 acttttagtca-aaatcaattttacagaatcaattcactcaaaatcaatt 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 22310509 - 22310477
Alignment:
Q  255 attctagaattaatttttacactcaaatttatt 287  Q
    ||||||||||||||||||||||| |||||||||    
T  22310509 attctagaattaatttttacacttaaatttatt 22310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 33843987 - 33844064
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||| |||||||||||    
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaacttatttttacatg 33844064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 4243406 - 4243473
Alignment:
Q  239 gaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||    
T  4243406 gaaattggagcttttgattctagaattgatttttacactcaaatttattgttctactcacttttacat 4243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 10185193 - 10185280
Alignment:
Q  219 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||| ||||| |||||| ||||||||| || |||| |||||| |||| || |||||||||||||||||||||| ||||| ||||||||    
T  10185193 ttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacat 10185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 2206431 - 2206362
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    |||||| ||||  ||||||||| ||||||||| |||| ||||||| ||| |||||| |||||||||||||    
T  2206431 aattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaatttat 2206362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 32818459 - 32818368
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||| |||| ||||||||||||| ||| || |||| ||||||||||| |||||| ||| ||||||||| |||  ||| | |||||||||    
T  32818459 agaattgattcta-tttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatg 32818368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 33843702 - 33843754
Alignment:
Q  239 gaaattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    |||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||    
T  33843702 gaaattggagctttttatcctaaaattgattttaacactcaaatttattgttt 33843754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 37439155 - 37439215
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||||||||||  || |||| |||||| |||| |||||||||||||| |||||||||    
T  37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgtt 37439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 48045776 - 48045744
Alignment:
Q  230 ttgaagctagaaattggagttttttattctaga 262  Q
    |||||||||||||||||||||||||||||||||    
T  48045776 ttgaagctagaaattggagttttttattctaga 48045744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 8330120 - 8330171
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttaca 275  Q
    ||||| ||||||||||||||||||| |||| |||||| |||| |||||||||    
T  8330120 tctaacttgaagctagaaattggagcttttgattctataattgatttttaca 8330171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 47596359 - 47596300
Alignment:
Q  247 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||||| ||| || |||| |||||||||||||||||||||||||  | |||||||||||    
T  47596359 agtttttgattataaaattgatttttacactcaaatttattgtttagcccatttttacat 47596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 41751327 - 41751270
Alignment:
Q  250 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||| ||||||||||| ||||||| ||| ||||||||||||| | ||| |||||||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtttaattcagttttacatg 41751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 9064241 - 9064317
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||| |||||| ||| ||||||| ||||||||||| ||||| |||||||| ||||  |||  ||||| ||||||||    
T  9064241 ttgaaactagaatttgtagtttttgattctagaattgattttcacactcaagtttacggttcaactcacttttacat 9064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 20712664 - 20712715
Alignment:
Q  233 aagctagaaattggagttttttattctagaattaatttttacactcaaattta 285  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||||| ||||    
T  20712664 aagctagaaattggagctttt-attctataattgatttttacactcaatttta 20712715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 30301076 - 30301013
Alignment:
Q  228 atttgaagctagaaattggagtttttt-attctagaattaatttttacactcaaatttattgtt 290  Q
    ||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||    
T  30301076 atttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgtt 30301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 27266869 - 27266792
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||||||||||| || |  | |||| |||||||||||||||||||||||||||||||  ||| | |||||||||    
T  27266869 ttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatg 27266792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 35264486 - 35264409
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||| ||||||||| ||| |||| ||||||||||| ||||| ||||| ||||||||||||  | |||||||||||||    
T  35264486 ttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatg 35264409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 3776532 - 3776608
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    ||||| |||||||||| || || | |||||||||||||||||||||||||||||| ||| |  ||||| ||||||||    
T  3776532 ttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacat 3776608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 44489235 - 44489299
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaa 281  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||| |||| |||||||||||||||    
T  44489235 aattgattctaacttgatactagaagttggagttttttattctacaattgatttttacactcaaa 44489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 829906 - 829945
Alignment:
Q  233 aagctagaaattggagttttttattctagaattaattttt 272  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  829906 aagctagaaattggagttttttattctagaattgattttt 829945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 36302191 - 36302270
Alignment:
Q  228 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    ||||||||||||| ||||||| |||| ||| ||||||| |||||  |||| ||||||||||||  ||||| |||||||||    
T  36302191 atttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaactcacttttacatg 36302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 46853594 - 46853533
Alignment:
Q  245 ggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 306  Q
    |||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
T  46853594 ggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 46853533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 44958676 - 44958621
Alignment:
Q  235 gctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||||||||||| |||| ||||||||| | ||||| |||||||| |||||||||    
T  44958676 gctagaaattggagcttttgattctagaaatgattttaacactcaactttattgtt 44958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 20484082 - 20484020
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacact 277  Q
    |||||||| |||||||||||||||||| || || ||||| ||||| ||||| ||| |||||||    
T  20484082 agaattgattctaatttgaagctagaatttagaatttttcattcttgaattgattgttacact 20484020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 23187865 - 23187915
Alignment:
Q  240 aaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||||||| |||| ||||||||||| | |||||||||||||||| |||||    
T  23187865 aaattggagcttttaattctagaattgaattttacactcaaatttgttgtt 23187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 35058375 - 35058445
Alignment:
Q  234 agctagaaattggagttttttattctagaattaatttttacactcaaat-ttattgtttgactcattttta 303  Q
    ||||||||||| ||| |||| ||||||||||| ||||| |||||||||| ||||||||  ||||| |||||    
T  35058375 agctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 37703132 - 37703169
Alignment:
Q  253 ttattctagaattaatttttacactcaaatttattgtt 290  Q
    ||||| || |||||||||||||||||||||||||||||    
T  37703132 ttattttaaaattaatttttacactcaaatttattgtt 37703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 3845189 - 3845129
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaatt-aatttttacactcaaatttattgt 289  Q
    ||||| ||||||| ||||| |||| ||||||||||| | |||||||||| |||||||||||    
T  3845189 ttgaaactagaaactggagcttttgattctagaattgattttttacactaaaatttattgt 3845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 25359649 - 25359589
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 290  Q
    |||||| ||||| ||| |||||||||||||| |||| ||||| |||| || ||||||||||    
T  25359649 ttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgtt 25359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 38332627 - 38332559
Alignment:
Q  232 gaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattt 300  Q
    ||||||| ||||||||| || | |||||| ||||  | |||||||||||||||||||||  ||||||||    
T  38332627 gaagctacaaattggagcttctgattctaaaattggtatttacactcaaatttattgttcaactcattt 38332559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 53567968 - 53568050
Alignment:
Q  317 tatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatttt 401  Q
    |||||||| ||||||||||||| | |||||||| ||| |||||| | |||||||||  | ||||||||||||  |||||||||||    
T  53567968 tatccaaacataaattactttt-cattcaactcacttttaatca-aaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 33608499 - 33608591
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||||||  ||||||||| | ||||| || |||  ||||| |||||||||    
T  33608499 agaattgattctaacttgaagctagaagttggagtttttcattctagaatggatttttacagttaaattcatagttcaactcacttttacatg 33608591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 42724403 - 42724452
Alignment:
Q  216 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 265  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  42724403 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 42724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 3043124 - 3043040
Alignment:
Q  202 gttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    ||||||| |||  |||||||| |||||  ||||||||||||||||||||||  ||||||||||| ||||||| | ||||| ||||    
T  3043124 gttgcttaagaatagaattgattctaacatgaagctagaaattggagttttcaattctagaattgatttttatattcaaagttat 3043040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 37877062 - 37877141
Alignment:
Q  224 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttta 303  Q
    ||||| |||||||||||| || ||||||||  | ||||||| ||||||||  |||||||||||||||| ||||| |||||    
T  37877062 tctaacttgaagctagaatttagagtttttgctcctagaatgaatttttagcctcaaatttattgtttaactcactttta 37877141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 10898718 - 10898808
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||| ||||| ||||||  ||||||||||||| || | ||||  ||| |||||||||| |||||||||||||  ||||| |||||||||    
T  10898718 agaattgattctaacttgaagtaagaaattggagttattgaatcta--attgatttttacacacaaatttattgttcaactcacttttacatg 10898808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 11132873 - 11132804
Alignment:
Q  217 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 286  Q
    |||||| ||||| ||||||||| |||||| || |||||||| ||||||| || |||||||||||| ||||    
T  11132873 aattgattctaacttgaagctacaaattgtagctttttattgtagaattgatatttacactcaaaattat 11132804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 24306171 - 24306110
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
T  24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24306110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 24367145 - 24367206
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 291  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
T  24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24367206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 29922956 - 29923059
Alignment:
Q  280 aatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataat 379  Q
    |||||||| ||| |||||||||| |||| ||||||| |||||||| |||||||||||   | |||||||| ||| || ||| | |||||||||| |||||    
T  29922956 aatttattttttaactcatttttgcatg-aatgaatgtatccaaacataaattacttca-cattcaactcacttatagtcaaa-atcaattttacataat 29923052  T
Q  380 caattca 386  Q
    |||||||    
T  29923053 caattca 29923059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 36639947 - 36640024
Alignment:
Q  230 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||| ||||||| || || | |||||||||||  |||||||||||||||||| ||||   |||| |||||||||    
T  36639947 ttgaagctggaaattgtagcttctaattctagaattgttttttacactcaaatttaatgttcacctcacttttacatg 36640024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 10859928 - 10859836
Alignment:
Q  215 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 307  Q
    |||||||| ||||| |||||||||||| |||||| ||||   || | | || |||||||  ||||||||||||||||||| | || |||||||    
T  10859928 agaattgattctaacttgaagctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattgtttgaccctttcttacatg 10859836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 14299850 - 14299913
Alignment:
Q  272 tacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattactt 336  Q
    |||||||||| ||| ||||  |||||||||||||| |||||||| |||||||  |||||||||||    
T  14299850 tacactcaaacttactgttcaactcatttttacat-gaatgaatgtatccaataataaattactt 14299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 18377 - 18426
Alignment:
Q  216 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 265  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  18377 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 18426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 14164 - 14132
Alignment:
Q  255 attctagaattaatttttacactcaaatttatt 287  Q
    ||||||||||| |||||||||||||||||||||    
T  14164 attctagaattgatttttacactcaaatttatt 14132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University