View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13837_low_5 (Length: 512)
Name: NF13837_low_5
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Complemental strand, 28996544 - 28996072
Alignment:
| Q |
20 |
agggtgactcagctcctggctgctctagtccgggcccacctgggcctgatgctgggctatttgagcctggtgctggtggggaagatgtgttagggcttgg |
119 |
Q |
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| T |
28996544 |
agggtgactcagctcctggctgctctagtccgggcccacctgggcctgatgctgggctatttgagcctggtgctggtggggaagatgtgttagggcttgg |
28996445 |
T |
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| Q |
120 |
gcctggagaagaagaggttgaaggagaaactgcaggagagggtgttggtgaccttgtggaggatgatggaactggtgctgaatttggtgataatgattgt |
219 |
Q |
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| T |
28996444 |
gcctggagaagaagaggttgaaggagaaactgcaggagagggtgttggtgaccttgtggaggatgatggaactggtgctgaatttggtgataatgattgt |
28996345 |
T |
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| Q |
220 |
gtgggtgctggtgcaggagcttgtgctaggcatgaggtagccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatatttt |
319 |
Q |
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| T |
28996344 |
gtgggtgctggtgcaggagcttgtgctaggcatgaggtagccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatatttt |
28996245 |
T |
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| Q |
320 |
ttgagagagaaaaatgttaattagaaatttagaactnnnnnnntgagtagtgaaagatgattagatttgagttgaggagaattggtaatggatagaaaag |
419 |
Q |
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| T |
28996244 |
ttgagagagaaaaatgttaattagaaatttagaactaaaaaaatgagtagtgaaagatgattagatttgagttgaggagaattggtaatggatagaaaag |
28996145 |
T |
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| Q |
420 |
aactatgatattgcttgtgtatatatagtgtacaatggattattatattgcttgtgtttttagctaggacggt |
492 |
Q |
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| T |
28996144 |
aactatgatattgcttgtgtatatatagtgtacaatggattattatattgcttgtgtttttagctaggacggt |
28996072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 58 - 345
Target Start/End: Complemental strand, 29008463 - 29008172
Alignment:
| Q |
58 |
cctgggcctgatgctgggctatttgagcctggtgctggtggggaagatgtgttagggcttgggc------ctggagaagaagaggttgaaggagaaactg |
151 |
Q |
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|||||||| ||||| ||| ||||||||||||||||||||| ||| | ||||| |||||||||| |||| |||||||| |||||||||||||||| |
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| T |
29008463 |
cctgggccagatgccgggacatttgagcctggtgctggtggtgaaaaagtgttcgggcttgggcttgagcctggtgaagaagaagttgaaggagaaactg |
29008364 |
T |
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| Q |
152 |
caggagagggtgttggtgaccttgtggaggatgatggaactggtgctgaatttggtgataatgattgtgtgggtgctggtgcaggagcttgtgctaggca |
251 |
Q |
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| T |
29008363 |
caggagagggtgttggtgattttgtggagggtgatggagctggtgctgaatttggtgataat---tgtgtgggtgctggtgcaggagcttgtgctaggca |
29008267 |
T |
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| Q |
252 |
tgaggtagccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatattttttgagagagaaaaatg-ttaattagaa |
345 |
Q |
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||| ||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
29008266 |
tgatgtagccaaaagtcccaatatcacaaacaatttgattgatgcaaaacccatgttgtatatgttttttgagagagaagaatgtttaattagaa |
29008172 |
T |
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