View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13837_low_8 (Length: 403)
Name: NF13837_low_8
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 43021294 - 43020910
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
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| T |
43021294 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
43021195 |
T |
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| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021194 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagt |
43021095 |
T |
|
| Q |
201 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021094 |
gcttaagactcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatg |
43020995 |
T |
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| Q |
301 |
tgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttcagcttatgcgcttatt |
385 |
Q |
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| T |
43020994 |
tgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttcagcttatgcgcttatt |
43020910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 35059992 - 35059618
Alignment:
| Q |
1 |
aatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttac |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35059992 |
aatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatatcattaactacttac |
35059895 |
T |
|
| Q |
101 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgt-gaactatgcag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
35059894 |
ctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcag |
35059795 |
T |
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| Q |
200 |
tgcttaagactcatccgagt---ttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtaga |
296 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35059794 |
tgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaagatcgagaatttggtaga |
35059695 |
T |
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| Q |
297 |
gatgtgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttcagct |
373 |
Q |
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| T |
35059694 |
gatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtcttaattttcagct |
35059618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 42810459 - 42810088
Alignment:
| Q |
9 |
ttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatatcattaactacttacctattgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| || |||| |
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| T |
42810459 |
ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacacaa-gacatttttccatgtcattaactacttacatagtgaa |
42810361 |
T |
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| Q |
109 |
tatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggcatgtgaactatgcagtgcttaaga |
208 |
Q |
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| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||| |
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| T |
42810360 |
tttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcatttgaactatggagtgcttaaga |
42810262 |
T |
|
| Q |
209 |
ctcatccgagtttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagatcgagaatttggtagagatgtgagtagt |
308 |
Q |
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||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42810261 |
gtcatcgaagttt---gtcttattgcttttaatgagtttaattctttcatggaacagggacttatccaaagatcgagaatttggtagagatgtgagtagt |
42810165 |
T |
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| Q |
309 |
gttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttcagcttatgcgcttatt |
385 |
Q |
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| T |
42810164 |
gttggagatgtttcttcgtcgaaaccaaaagcagtatgtactttctattgttttaattttcagcttatgcgcttatt |
42810088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 41567447 - 41567544
Alignment:
| Q |
273 |
tccaaagatcgagaatttggtagagatgtgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttca |
370 |
Q |
| |
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||||| |||||||| |||||||| || ||||| |||||||| |||||||||||| ||| ||||| | ||||||||||| |||||| |||||||||| |
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| T |
41567447 |
tccaaggatcgagattttggtagggaagtgagcagtgttggggatgtttcttcaataaaatcaaaaactgtatgtactttttattgtcttaattttca |
41567544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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