View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13837_low_9 (Length: 382)
Name: NF13837_low_9
Description: NF13837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13837_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 5352769 - 5352419
Alignment:
| Q |
14 |
aggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgctaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5352769 |
aggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaacccatttttctccgctggcagatattgctaca |
5352670 |
T |
|
| Q |
114 |
ccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaagaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5352669 |
ccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttatgttctgatgtgaagtaattaaagaag |
5352570 |
T |
|
| Q |
214 |
aaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgcag |
313 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5352569 |
acaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaatttttcag |
5352470 |
T |
|
| Q |
314 |
cttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352469 |
cttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
5352419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 5377117 - 5376765
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||| ||| ||||||||||| || |||||| |||||||||||| ||||| || | ||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5377117 |
atagctcctgagagattgcacgacgacatggtcaaaacacgaacaccctccaataaagataaagcacgaccccattcatctccgctggaagatattgcta |
5377018 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
5377017 |
caccgtctagatacaattctgtgatatctgtaaggtttttcacaagcatttctatatttggattctcaagttttaggctttgacgtgaagtaattaaaga |
5376918 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
5376917 |
agacaaatcaagagtaaccaaccttgtaaggtgagcaatttcttttgggacctgcccctcaaagccagcatcagacaagttgagatacctcaaattctgc |
5376818 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
|| ||||||| ||| |||||||||| ||| ||| | |||||| |||||||| |
|
|
| T |
5376817 |
agtttatgcagcgcttgaggaatcacaaaattaaacttattaaaagccaaatt |
5376765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 5410883 - 5410531
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | ||||||||| ||||| || || |||||||| | |
|
|
| T |
5410883 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagccccttcaataaagataaaggatgaccccattcctctcccctagctgatattgcaa |
5410784 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| || ||| | |||||||||| ||||||||||||| ||||| ||||| ||| | ||| |
|
|
| T |
5410783 |
caccatctagatataattctgtaatatctgtaaggttttgcacaagcattcctatatttggcttctcaagttttaagttctgcagtgaaataaatttaga |
5410684 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
||||||||||||| | ||||||||| | |||||||||||||| | ||| || || |||| |||||| |||| ||| ||||| | |||||||||||| || |
|
|
| T |
5410683 |
agaaaaatcaagaatgaccaaccttttgaggtgagaaatttcctccggaacctgtcccttaaagccggcattagacaagtttaaatacctcaaattatgt |
5410584 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||||| |||||| |||||||| |
|
|
| T |
5410583 |
agcctatgcaagtcttgcggaatcacagaacgaaagtgattaaaagccaaatt |
5410531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 5391437 - 5391085
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||| | ||||||| | |
|
|
| T |
5391437 |
ataggtccagagagattgcaggatgacatgcttaaaacacgaagaccctccaaagaagataaagcacgaccccattcctctccgctggtacatattgcca |
5391338 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| ||| || | |||||| | || ||||||||| ||||||||||| ||| ||| |
|
|
| T |
5391337 |
caccatctagatacaattctatgatatttgtgaggtttttcacaagtatcgccatattttgctttgcaagttttaggctctgatgtgaaataaacgtaga |
5391238 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| | ||||| | || |||||||||||||| || ||||||||||| |||||||| ||| |
|
|
| T |
5391237 |
tgacaaatcaagagtaaccaaccttgtgaggtgagaaatttctattgggacatacccgtcaaagccagcatcggacaagttgagatagctcaaattctgc |
5391138 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
|| ||||||| ||| ||||||||| |||| ||| | ||| || |||||||| |
|
|
| T |
5391137 |
agtttatgcagcgcttgaggaatcacggaattaaacttattcaaagccaaatt |
5391085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 5500634 - 5500307
Alignment:
| Q |
15 |
ggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgctacac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5500634 |
ggtccagagagattgcatgatgacatgctcagaacacgaagaccttctaacgaagataaagcacgaccccattcctctccgctggcagatattgctacac |
5500535 |
T |
|
| Q |
115 |
catctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaagaaga |
214 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| ||||| || ||| | |||||||| ||| |||||||| | |||| |||||||||| ||||||| |
|
|
| T |
5500534 |
catctaaatataattctgtgatatcggtgaagttttgcacaagcattgtaatatttggcttcctaagttttaggctgtgatctgaagtaattgaagaaga |
5500435 |
T |
|
| Q |
215 |
aaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgcagc |
314 |
Q |
| |
|
| ||||||| |||| |||||||| |||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
5500434 |
catatcaagaataactaaccttgttaggtgagaaatttcttctgggacctgcccctcaaagccagcatcagacaagttcagatacctcaaattctgcagt |
5500335 |
T |
|
| Q |
315 |
ttatgcaagtctttaggaatcacagaat |
342 |
Q |
| |
|
|||| || || | |||||||||||||| |
|
|
| T |
5500334 |
ttatacatctcatgaggaatcacagaat |
5500307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 364
Target Start/End: Original strand, 5348290 - 5348642
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || ||| || |||||| |||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5348290 |
ataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccattcttctccgctggcagatattgcta |
5348389 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||| | || | |||||||||| | ||||||||||| ||||||||||||| | |||| |
|
|
| T |
5348390 |
caccatctaaatacaactttgtgatatctgtgaggtttcgaataaacattgctatatttggctgctcaagttttaggacgtgatgtgaagtaaatgaaga |
5348489 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
|| |||||||||| ||||||||| | |||||||||||||| || |||| || |||| ||| ||||||| || ||||| |||||| |||||||||| |
|
|
| T |
5348490 |
cgacaaatcaagagagaccaaccttttgaggtgagaaatttccttagggatctgtcccttaaatccagcattggacaagttcagatacatcaaattttgt |
5348589 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
5348590 |
agcttatcaaagtcttgaggaatcacagaacgaaaatcattaaaagccaaatt |
5348642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 5425610 - 5425950
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| ||| || || | |||||| ||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
5425610 |
ataggtccagagagattgcatgatgacatgcttagaacacgaaggccccccaatggatataaagaacgaccccattcttctccactggctgatattgcta |
5425709 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| || || |||||||||||||||||||||| | ||||||||||||| | |||| |
|
|
| T |
5425710 |
caccatctagatacaattttgtgatatctgtgaagtttttcataaacatccctatatttggattctcaagtttgaggacgtgatgtgaagtaaatgaaga |
5425809 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
||| ||||||||||| ||||||||| | |||||| ||||||| | |||| || || | ||||||||| | || ||||| | |||||||||||| || |
|
|
| T |
5425810 |
agacaaatcaagagtgaccaaccttttgaggtgaaaaatttccgtagggatctgtccttgaaagccagcgttggagaagttcaaatacctcaaattctga |
5425909 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcatt |
352 |
Q |
| |
|
|| | ||||| |||| ||| |||| ||||||||||||||| |
|
|
| T |
5425910 |
agttgatgcagctcttgaggcatcatagaatgaaagtcatt |
5425950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 5399899 - 5399760
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| ||| ||| || || | |||||| ||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
5399899 |
ataggtccagagagattgcttgatgacatgctcagcacacaaagcccccccaatggatataaagaacgaccccattcttctgcgctggctgatattgcta |
5399800 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttca |
153 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
5399799 |
caccatctagatacaattttgtgatatc--tgaggtttttca |
5399760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 5570568 - 5570527
Alignment:
| Q |
209 |
agaagaaaaatcaagagtaaccaaccttgtaaggtgagaaat |
250 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
5570568 |
agaagagagatcaagagtaaccaaccttgtaagctgagaaat |
5570527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 20327293 - 20326941
Alignment:
| Q |
12 |
ataggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaccccatttttctccgctggcagatattgcta |
111 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||||||| ||||| || | ||||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
20327293 |
ataggtcctgagagattgcacgacgacatgctcaaaacacgaacaccctccaataaagataaagcacgaccccactcatctccgctggaagatattgcta |
20327194 |
T |
|
| Q |
112 |
caccatctagatacaattctgtgatatctgtgaggtttttcaaaagagtctctatatttggattctcaagttttattttctgatgtgaagtaattaaaga |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
20327193 |
caccgtctagatacaattctgtgatatctgtaaggtttttcacaagcatttctatatttggattctcaagttttaggttttgacgtgaagtaattaaaga |
20327094 |
T |
|
| Q |
212 |
agaaaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagatacctcaaattttgc |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
20327093 |
agacaaatcaagagtaaccaaccttgtaaggtgagcaatttcttttgggacctgctcctcaaagccagcatcagacaagttgagatacctcaaattctgc |
20326994 |
T |
|
| Q |
312 |
agcttatgcaagtctttaggaatcacagaatgaaagtcattaaatgccaaatt |
364 |
Q |
| |
|
|| ||||||| ||| |||||||||| ||| ||| | |||||| |||||||| |
|
|
| T |
20326993 |
agtttatgcagcgcttgaggaatcacaaaattaaacttattaaaagccaaatt |
20326941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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