View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_1 (Length: 565)
Name: NF13838_high_1
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Complemental strand, 2102703 - 2102161
Alignment:
| Q |
11 |
atgaatcaacctggtaagtctcttggagtggttggtcttggtggcctcggtcatatggcagtaaaatttgggaaggcatttggtttgcgtgtaacggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102703 |
atgaatcaacctggtaagtctcttggagtggttggtcttggtggcctcggtcatatggcagtaaaatttgggaaggcatttggtttgcgtgtaacggttt |
2102604 |
T |
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| Q |
111 |
tcagcactagtatgtcaaagaaagaggaggcgctgagctttcttggtgcagaccaatttgttgtttcatctaatcaagaagagatgagggtaagtattac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2102603 |
tcagcactagtatgtcaaagaaagaggaggcgctgagctttcttggtgcagaccaatttgttgtttcatctaatcaagaagagatgagggcaagtattac |
2102504 |
T |
|
| Q |
211 |
atgaaccatctataccatagcattttcttcaaaccatgaggtgaatactaataccaatgacatgtgcttctgnnnnnnnatctaaattaatggtgacttc |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2102503 |
atgaaccatctatatcatagcattttcttcaaaccatgaggtgaatactaataccaatgacatgtgcttctgtttttttatctaaattaatggtgacttc |
2102404 |
T |
|
| Q |
311 |
tatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtcacttctgaagatatttggtgtt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2102403 |
tatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtcacttctgaagatatctggtgtt |
2102304 |
T |
|
| Q |
411 |
ctgg-cttagttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttggaataaca |
509 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102303 |
ctggccttagttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtatagaagttttgttggaataaca |
2102204 |
T |
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| Q |
510 |
actcattctttgtactgctggaaccagaaataatatccttcat |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102203 |
actcattctttgtactgctggaaccagaaataatatccttcat |
2102161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 2096491 - 2096243
Alignment:
| Q |
11 |
atgaatcaacctggtaagtctcttggagtggttggtcttggtggcctcggtcatatggcagtaaaatttgggaaggcatttggtttgcgtgtaacggttt |
110 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2096491 |
atgaatcaacccggcaagtctcttggagtggttggtcttggtggcctcggtcatatggcggtaaaatttgggaaggcatttggtttgcgtgtaacggttt |
2096392 |
T |
|
| Q |
111 |
tcagcactagtatgtcaaagaaagaggaggcgctgagctttcttggtgcagaccaatttgttgtttcatctaatcaagaagagatgagggtaagtattac |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2096391 |
tcagcactagcatgtcaaagaaagaggaggcgctgagccttcttggtgcagaccaatttgttgtttcatctaatcaagaagatatgagggtatgtattat |
2096292 |
T |
|
| Q |
211 |
atgaaccatctataccatagcattttcttcaaaccatgaggtgaatact |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2096291 |
atgaaccatctataccatagcattttcttcaaaccatgaagagaatact |
2096243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 290 - 548
Target Start/End: Complemental strand, 2095994 - 2095735
Alignment:
| Q |
290 |
atctaaattaatggtgacttctatgaaggcgttagctaaaacattggattttataattgacacggcttcgggtgatcacccatttgatccttacatgtca |
389 |
Q |
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||||||| | ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
2095994 |
atctaaactgatggtgacttctatgcaggcgttggctaaatcattggattttataattgacacggcatcgggtgatcacctgtttgatccttacatgtca |
2095895 |
T |
|
| Q |
390 |
cttctgaagatatttggtgttctgg-cttagttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtat |
488 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095894 |
cttctgaagatatctggtgttctggtcttagttgggttcccaagtgaagtcaaattcagccctgcaagccttaatttaggtaatgttgcatttgaagtat |
2095795 |
T |
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| Q |
489 |
agaagttttgttggaataacaactcattctttgtactgctggaaccagaaataatatcct |
548 |
Q |
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||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
2095794 |
agaagttttgttgtaataacaactcgttctttgtaccgctggaaccagaaataatatcct |
2095735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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