View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_11 (Length: 364)
Name: NF13838_high_11
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 34144277 - 34144621
Alignment:
| Q |
19 |
atcccctgagcccaatacttcttcaaacataggatcattgttaaaaatggcagcatcatttagatatacatgatttcttatgtaagatgtgtcttctgat |
118 |
Q |
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| T |
34144277 |
atcccctgagcccaacacttcttcaaacataggatcattgttaaaaatggcagcatcatttagatatacatggtttcttatgtatgatgtgtcttctgat |
34144376 |
T |
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| Q |
119 |
gtgcgcggacatttgacgcttctatccacattaccattttctgaaacaacttctacgctatttggtgttcctcctgcatcaagtgagccactgctgcatc |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144377 |
gtgcgcggacatttgacgcttctatccacattaacattttctgaaacaacttctacgctatttggtgttcctcctgcatcaagtgagccactgctgcatc |
34144476 |
T |
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| Q |
219 |
tacttctctttttcctctttcttttatcagaaaaatcaatcctttcacacatagactggtcatagatcttgacatcaaatttatacttgttaatgcagtt |
318 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34144477 |
tacttctctttttcctctttcttttgtcagaaaaatcaatcctttcacacatagactggtcatagatcttgacatcaaagttatacttgttaatgcagtt |
34144576 |
T |
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| Q |
319 |
gaatacaagcaaatctccaatgtcaagcttgtgagccgatgagaa |
363 |
Q |
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| T |
34144577 |
gaatacaagcaaatctccaatttcaagcttgtgagccgatgagaa |
34144621 |
T |
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