View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_12 (Length: 334)
Name: NF13838_high_12
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 33237871 - 33237563
Alignment:
| Q |
18 |
ctttcttgcgcttcaagtattcgtcaacagaatctgcaacatatatgaacatagcatttaactctgttcnnnnnnntgactttgcctcctaacatgtatt |
117 |
Q |
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| T |
33237871 |
ctttcttgcgcttcaagtattcttcaacagaatctgcaacatatatgaacatagcatttaactctattcaaaaaaatgactttgcctcctaacatgtatt |
33237772 |
T |
|
| Q |
118 |
cnnnnnnnnnnccaccaggtgtg-cacctatttgccatttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatc |
216 |
Q |
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| T |
33237771 |
caaaaaaataaccaccaggtgtgtcacctatttgccatttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatc |
33237672 |
T |
|
| Q |
217 |
tgatagtgtatagtccctgaaacaagaacagaaaaaagaattgctatacaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237671 |
tgatagtgtatagtccctgaaacaagaacagaaaaaagaattgctatagaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttctt |
33237572 |
T |
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| Q |
317 |
cgttcatct |
325 |
Q |
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||||||||| |
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| T |
33237571 |
cgttcatct |
33237563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 26376748 - 26376680
Alignment:
| Q |
164 |
ttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtatagtcc |
232 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
26376748 |
ttcagaggttccttcaacttagaatcaacaaaataaagtttgtctttagaatctgatagtgtatagtcc |
26376680 |
T |
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