View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13838_high_13 (Length: 309)
Name: NF13838_high_13
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 39226870 - 39227173
Alignment:
| Q |
1 |
gcacggaagataatcaaaataataagatttgaacatattggacaagtctcttgtcatcttgatgtgctctaattttaagagtttgtatttatttactcac |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39226870 |
gcacgaaagataatcaaa-taataagatttgaacatattggacaagtctcttgtcatcttaatgtgctctaattttaagagtttgtatttatttactcac |
39226968 |
T |
|
| Q |
101 |
ataagcacttgtgagaagggatagagcttctaatatttctagtgcagagcttttttatgatacatgtttgaaacctgtacatcccatttttcttttgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39226969 |
ataagcacttgtgagaagggatagagcttctaatatttctagtgcagagcttttttatgatacatgtttgaaacctgtacatcccatttttcttttgttc |
39227068 |
T |
|
| Q |
201 |
ttatttattttgctgcatgtgatttgcaacac---gttgttgtctaattgacaccaaatatttctttatatgagaccttaattatgagctgacattattt |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39227069 |
ttatttattttgctgcatctgatttgcaacacattgttgttgtctaattgacaccaaatatttctttatatgagaccttaattttgagctgacattattt |
39227168 |
T |
|
| Q |
298 |
tgatt |
302 |
Q |
| |
|
||||| |
|
|
| T |
39227169 |
tgatt |
39227173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University