View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_18 (Length: 268)
Name: NF13838_high_18
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_18 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 11381061 - 11381166
Alignment:
| Q |
163 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11381061 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11381160 |
T |
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| Q |
263 |
gagaga |
268 |
Q |
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|||||| |
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| T |
11381161 |
gagaga |
11381166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 11404461 - 11404566
Alignment:
| Q |
163 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11404461 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11404560 |
T |
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| Q |
263 |
gagaga |
268 |
Q |
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|||||| |
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| T |
11404561 |
gagaga |
11404566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 11396439 - 11396542
Alignment:
| Q |
163 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11396439 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11396538 |
T |
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| Q |
263 |
gaga |
266 |
Q |
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|||| |
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| T |
11396539 |
gaga |
11396542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 11453153 - 11453255
Alignment:
| Q |
19 |
gactttggtgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
11453153 |
gactttggtgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaacggcaacaaagatgagcgcgagaacgaataccttagaag |
11453252 |
T |
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| Q |
119 |
cca |
121 |
Q |
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||| |
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| T |
11453253 |
cca |
11453255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 11453296 - 11453397
Alignment:
| Q |
167 |
tttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgtgaga |
266 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
11453296 |
tttctctaatgaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtagtgaataccgttttataaggttaagattgtgaga |
11453395 |
T |
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| Q |
267 |
ga |
268 |
Q |
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|| |
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| T |
11453396 |
ga |
11453397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 11380927 - 11381021
Alignment:
| Q |
27 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11380927 |
tgatgcctttggtgatgaagctggggcttcagcggccatagccacgccaacaatgacaacaaagatgagcgcgagaacgaatacctttgaagcca |
11381021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 11396305 - 11396399
Alignment:
| Q |
27 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
121 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11396305 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11396399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 11404327 - 11404421
Alignment:
| Q |
27 |
tgatgactttggtgatgaagctggggcttcagcggccatagcgacgccaacaatggcaacaaagatgagcgcgagaacaaatacctttgaagcca |
121 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11404327 |
tgatgcctttggtgatgaagttggggcttcagcggccatagccacgccaacaatggcaacaaagatgagcgcgagaacgaatacctttgaagcca |
11404421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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