View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_2 (Length: 543)
Name: NF13838_high_2
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 28872992 - 28872482
Alignment:
| Q |
18 |
atgaaatgatacgaggaggaaggaggcctcgaagacccaaacgatctctttcagttaaaggaaatcctgtatcctacatttcgagagaattnnnnnnnnn |
117 |
Q |
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| T |
28872992 |
atgaaatgatacgaggaggaaggaggcctcgaagacccaaacgatctctttcagttaaaggaaatcctgtatcctacattttgaga--attcaaaaaaaa |
28872895 |
T |
|
| Q |
118 |
nntat----taaatccaaaccaatggttaagaacgggaatcagaaacttgaaattttacgcagatagtacttatt-gtttgtctaaatcctcagtaccca |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |
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| T |
28872894 |
tatatatattaaatccaaaccaatggttaagaacgggaatcagaaacttgaaattttacgcagatagtacttattcgtttatctaaatcctcagtatcca |
28872795 |
T |
|
| Q |
213 |
ggaccaaaaatgacatcgaacctaaactaattcgaggtgaattgaatgaacacatataatggtataactttcccaatgtctattttctcattcataaaac |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872794 |
ggaccaaaaatgacattgaacctaaactaattcgaggtgaattgaatgaacacatataatggtataactttcccaatgtctattttctcattcataaaac |
28872695 |
T |
|
| Q |
313 |
taatatcagtattcaaattttaaatcagttgaatcaaatcacaaaatcatcaaattttgggacttcaaatgaacattgacagaaaacaaaagtgattatc |
412 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872694 |
taatatcagtattcaaactttaaatcagctgaatcaaatcacaaaatcatcaaattttgggacttcaaatgaacattgacagaaaacaaaagtgattatc |
28872595 |
T |
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| Q |
413 |
aacaaataacactcagagccccatttgttacaccttttttcataaaaacatcannnnnnnaaacaaaataactatttttagatgatttcataatcatatc |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28872594 |
aacaaataacactcagagccccatttgttacaccttttttcataaaaacatcatttttttaaacaaaataactatttttagatgatttcataatcatatc |
28872495 |
T |
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| Q |
513 |
atatgattgtttt |
525 |
Q |
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| T |
28872494 |
atatgtttgtttt |
28872482 |
T |
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