View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13838_high_20 (Length: 265)

Name: NF13838_high_20
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13838_high_20
NF13838_high_20
[»] chr7 (1 HSPs)
chr7 (79-249)||(43687047-43687217)
[»] chr1 (3 HSPs)
chr1 (80-158)||(5913798-5913876)
chr1 (80-157)||(2467520-2467597)
chr1 (80-152)||(42327787-42327859)
[»] chr4 (1 HSPs)
chr4 (80-153)||(30669197-30669270)
[»] chr3 (2 HSPs)
chr3 (80-153)||(31393700-31393773)
chr3 (80-157)||(55145331-55145408)
[»] chr5 (1 HSPs)
chr5 (80-157)||(35073179-35073256)
[»] chr6 (1 HSPs)
chr6 (82-152)||(6311545-6311615)
[»] chr2 (1 HSPs)
chr2 (80-141)||(39003377-39003438)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 43687047 - 43687217
Alignment:
Q  79 tcgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgttttgttgatttatgattaatat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43687047 tcgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgttttgttgatttatgattaacat 43687146  T
Q  179 aaagatactaaggttagaatatatttgtgatgttcccgctcattgttccatcaacaagaaattcgaaaacc 249  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43687147 aaagatattaaggttagaatatatttgtgatgttcccgctcattgttccatcaacaagaaattcgaaaacc 43687217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 5913876 - 5913798
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgttt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5913876 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgttt 5913798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 2467520 - 2467597
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgtt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467520 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgtt 2467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 42327787 - 42327859
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgc 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  42327787 cgcgccaggtaggggtcgaacctacgaccttctgcttaggaaacagacgctctatccactgagctacaagcgc 42327859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 30669197 - 30669270
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgct 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30669197 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgct 30669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 31393700 - 31393773
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgct 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31393700 cgcgccaggtaggggtcgaacctacgaccttctgcttaggaaacagacgctctatccactgagctacaggcgct 31393773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 55145331 - 55145408
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgtt 157  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55145331 cgcgccagataggggtcgaacctacgaccttctgcttaggaaacagacgctctatccactgagctacaagcgcttgtt 55145408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 35073179 - 35073256
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgcttgtt 157  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  35073179 cgcgccaggtaggggtcgaacctacgaccttccgcttaggaaacggacgctctatccactgagctacaggcgcttgtt 35073256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 6311545 - 6311615
Alignment:
Q  82 cgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactgagctacaggcgc 152  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6311545 cgccagataggggtcgaacctacgaccttctgcttaggaaacagacgctctatccactgagctacaggcgc 6311615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 39003377 - 39003438
Alignment:
Q  80 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactga 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39003377 cgcgccaggtaggggtcgaacctacgactttctgcttaggaaacagacgctctatccactga 39003438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University