View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13838_high_26 (Length: 242)

Name: NF13838_high_26
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13838_high_26
NF13838_high_26
[»] chr6 (1 HSPs)
chr6 (4-226)||(32942961-32943183)
[»] chr2 (1 HSPs)
chr2 (4-141)||(11316919-11317047)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 32942961 - 32943183
Alignment:
Q  4 ttgagaaatttgagggaagaatcgtaatcggtggtggaatttgaacaatttgaaattgtgcgttttggattgaaaattgttgtgttgttttaatggcgga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32942961 ttgagaaatttgagggaagaatcgtaatcggtggtggaatttgaacaatttgaaattgtgcgttttggattgaaaattgttgtgttgttttaatggcgga 32943060  T
Q  104 aggtgaaggaggagattgtcctccaaagaatgttgttcatccggaatttgttacggttacggctgcggctgcaactgcggctgcggctgccaatgcgact 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32943061 aggtgaaggaggagattgtcctccaaagaatgttgttcatccggaatttgttacggttacggctgcggctgcaactgcggctgcggctgccaatgcgact 32943160  T
Q  204 gcgacggcgtggttggatgtacc 226  Q
    |||||||||||||||||||||||    
T  32943161 gcgacggcgtggttggatgtacc 32943183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 11316919 - 11317047
Alignment:
Q  4 ttgagaaatttgagggaagaatcgtaatcggtggtggaatttgaacaatttgaaattgtgcgttttggattgaaaattgttgtgttgttttaatggcgga 103  Q
    ||||||||||||||||||||||||||||  |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11316919 ttgagaaatttgagggaagaatcgtaattagtggtggaatt---------tgaaattgtgcgttttggattgaaaattgttgtgttgttttaatggcgga 11317009  T
Q  104 aggtgaaggaggagattgtcctccaaagaatgttgttc 141  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  11317010 aggtgaaggaggagattatcctccgaagaatgttgttc 11317047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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