View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_5 (Length: 463)
Name: NF13838_high_5
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Original strand, 1113200 - 1113639
Alignment:
| Q |
3 |
gcataggtaaacaatgtagagaaaggtaaatgttatattccatcataattcttatcttacactgatatttgcatttagtggtttgaggatgtttttcttt |
102 |
Q |
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| T |
1113200 |
gcataggtaaacaatgtagagaaaggtaaatgttatattcaatcacaattcttatcttacactgatatttgcatttagtggtttaaggatgtttttcttt |
1113299 |
T |
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| Q |
103 |
gaaaattggaagtgaaacttttgtttttcttttaggtggtataatcatttaaatccagatatnnnnnnnnctccatggaccaaagaagaggagtcaactc |
202 |
Q |
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| T |
1113300 |
gaaaattggaagtaaaacatttgtttttcttttaggtggtataatcatttaaatccagatataaaaaaaactccatggaccaaagaagaggagtcaactc |
1113399 |
T |
|
| Q |
203 |
ttatcaagactcacaaaatatatgggaatagttgggctgaaatagccaaatttctgcatggaaggtattgataggagatttcttttatatatacctagaa |
302 |
Q |
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| T |
1113400 |
ttatcaagactcacaaaatatatgggaatagttgggctgaaatagccaaatttctgcatggaaggtattgataggagatttcttttatatatacctagaa |
1113499 |
T |
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| Q |
303 |
catgttatttaaaatgctatgcaattgctttgtttgaattgtagatttaggataaagaaaaaagatatatagatgagaagatacatagatagatctagtg |
402 |
Q |
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| T |
1113500 |
catgttatttaaaatgctatgcaattgctttgtttgaattgtagatttaggataaag-aaaaagatatatagatgagaaaatacatagataggtctagtg |
1113598 |
T |
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| Q |
403 |
atcaagcagacctcttacaatatttagggtagtataccttga |
444 |
Q |
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| T |
1113599 |
atcaagca-aactcttacaaaatttagggtagtataccttga |
1113639 |
T |
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