View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_7 (Length: 396)
Name: NF13838_high_7
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 9440210 - 9440575
Alignment:
| Q |
13 |
aatatcatatttacggataaaaaagcagaaataagcatgcacaaactata--gagaattatagttcttctttccttatgatagatctannnnnnnatcaa |
110 |
Q |
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| T |
9440210 |
aatatcatatttacggataaaa--gcagaaataagcatgcacaaactatatagagaattatagttcttctttccttatgatagatctatttttt-atcaa |
9440306 |
T |
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| Q |
111 |
aagaagaatgatagatctaaacttaatataagtataatgcgtatgaaattgtcatgtgaacactgtgtataaaaataattgatttgtcatgtgatatctg |
210 |
Q |
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| T |
9440307 |
aagaagaatgatagatctaaacttaatataagtataatgcgtatgaaattgtcatgtgaacactgtgtataaaaataattgatttgtcatgtgatatctg |
9440406 |
T |
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| Q |
211 |
attatttgctattgcataataatcatgttcgccgcattataagcttttggctttattgaagagtgtttctggttgattataagaccacatacaacctagt |
310 |
Q |
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| T |
9440407 |
attatttgctattgcataataatcatgttcgccgcattataagcttttggctttattgaagaatgtttctggttgattataagaccacatacaacctagt |
9440506 |
T |
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| Q |
311 |
cctggtcatctttccttcaatgatctaaggatcaaaagagacaaaagacatcaaaacaaataaagcaac |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9440507 |
cctgttcatctttccttcaatgatctaaggatcaaaagagacaaaagacatcaaaacaaataaagcaac |
9440575 |
T |
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