View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_high_9 (Length: 382)
Name: NF13838_high_9
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11453388 - 11453495
Alignment:
| Q |
1 |
ttgtgagagaaattagggaaattgtggtgcaagattagagagataaattaagcttttggaatttgcggtaaattaatggtgatgcatagggcttgaattg |
100 |
Q |
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| T |
11453388 |
ttgtgagagaagttagggaaattgtggtgcaagattagagagataaattaaggttttggaatttgcggtaaattaatggtgatgcatagggtttgaattg |
11453487 |
T |
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| Q |
101 |
gagccaac |
108 |
Q |
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| T |
11453488 |
gagccaac |
11453495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 305
Target Start/End: Original strand, 11453682 - 11453819
Alignment:
| Q |
157 |
tgatcggtagacactttcataaaatggattattaatattaatgggataattataaa-gcaacgccaattctaatataaaaactaataacatgttaaatag |
255 |
Q |
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| T |
11453682 |
tgatcggtagatacttctataaaatggattattaatattactgggataattataaaagcaaggctaattctcatataaaagctaataaa----------- |
11453770 |
T |
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| Q |
256 |
tcatgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
305 |
Q |
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| T |
11453771 |
-catgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
11453819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 11454081 - 11454162
Alignment:
| Q |
300 |
ttccaacttaaggcannnnnnnaaaaaattaccattaatcatgcaatttgattcaac-cacaaaccatctcaacctatgctt |
380 |
Q |
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| T |
11454081 |
ttccaacttaaggcatttttaaaaaaaattaccattaatcatgcaatttgattcaacacacaaaccatctcaacctatgctt |
11454162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 11453547 - 11453603
Alignment:
| Q |
109 |
caattttgtaaaaaattgcaaatcaataaggtatttagttgaccactttgatcggta |
165 |
Q |
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| T |
11453547 |
caattttgtaaaatattgcaaattattaaggcatcgagttgacgactttgatcggta |
11453603 |
T |
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