View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_low_10 (Length: 369)
Name: NF13838_low_10
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 38289885 - 38289617
Alignment:
| Q |
14 |
tactgtaattactaattagtttaagatgtgatattgtggcagacaagttgacattatcatagtattttgtaaatatctagagctttgagtggttttcaaa |
113 |
Q |
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| T |
38289885 |
tactgtaattaataattagtttaagatgtgatattgtggcagacaagttgacattttcatagtattttgtaaatatctagagtttttagtggttttcaaa |
38289786 |
T |
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| Q |
114 |
ttgggggatgacacatattgcatcacataaactatttaagatatggtatatgattataatttaaagtcaagtacaatggttgggaccattatatatatcc |
213 |
Q |
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| T |
38289785 |
ttgggggatgacacatattgcatcacataaactatttaagatatggtatatgattataatttaaagtcaagtacaatggttgggaccattatatatatcc |
38289686 |
T |
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| Q |
214 |
aagtggagtgacccgtaaacaccatatatgtgggcaaaaaagaagaagaaatataattgctaagagaag |
282 |
Q |
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| T |
38289685 |
aagtggagtgacccgtaaacaccatatatgtgggcaaaaaagaagaagaaatataattgctaagagaag |
38289617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 38289601 - 38289517
Alignment:
| Q |
266 |
ataattgctaagagaagcattgaatatctatagttaatgtcagtattaaattcattaaattaaattaaattattcataagctaat |
350 |
Q |
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| T |
38289601 |
ataattgctaagagaagcattggatatctatagttaatgtcagtattaaattcattaaattaaattaaattattcataagctaat |
38289517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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