View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13838_low_21 (Length: 263)

Name: NF13838_low_21
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13838_low_21
NF13838_low_21
[»] chr7 (1 HSPs)
chr7 (1-249)||(4960448-4960695)
[»] chr5 (8 HSPs)
chr5 (18-89)||(41264381-41264452)
chr5 (32-92)||(14258888-14258948)
chr5 (18-76)||(7215464-7215522)
chr5 (18-81)||(973127-973190)
chr5 (18-77)||(22780340-22780399)
chr5 (1-83)||(14138559-14138641)
chr5 (18-83)||(7113610-7113675)
chr5 (22-83)||(17736754-17736815)
[»] chr3 (1 HSPs)
chr3 (24-83)||(42091793-42091852)
[»] chr6 (1 HSPs)
chr6 (22-83)||(32342614-32342675)
[»] chr1 (4 HSPs)
chr1 (12-91)||(10775023-10775102)
chr1 (22-83)||(42819635-42819696)
chr1 (22-91)||(52432667-52432736)
chr1 (18-78)||(15321060-15321120)
[»] chr8 (2 HSPs)
chr8 (26-75)||(6630386-6630435)
chr8 (18-83)||(32166631-32166696)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 4960695 - 4960448
Alignment:
Q  1 attttgaatcaaagaatatgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataattcattataattaatgtaa 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4960695 attttgaatcaaagaatacgaagatcatatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaataataattcattataattaatgtaa 4960596  T
Q  101 ttgcagcgccgcattgaactaagtaactattcaatacttctcattcaacgatgtgaataagaaatttgccatgcagtgaacgtgggatatacttatatat 200  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4960595 ttgcagcgccgcattgaacta-gtaactgttcaatacttctcattcaacgatgtgaataagaaatttgccatgcagtgaacgtgggatatacttatatat 4960497  T
Q  201 taatataataatacatgcagtcttcattatttacttgaggtattcttct 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4960496 taatataataatacatgcagtcttcattatttacttgaggtattcttct 4960448  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 41264452 - 41264381
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataattcattat 89  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||| ||||||||||||||| || |||||||    
T  41264452 atgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatgacaactcattat 41264381  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 14258888 - 14258948
Alignment:
Q  32 ttgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataattcattataat 92  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||||| | ||||||||    
T  14258888 ttgaatgaaaaaagtgaaaaagtttgatgtttttgagatgaaaatgataaataattataat 14258948  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7215464 - 7215522
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaat 76  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||| |||| ||||||||    
T  7215464 atgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaaat 7215522  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 973190 - 973127
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataa 81  Q
    ||||||||||||| |||||| ||  ||||||  || ||||||||||||||||| ||||||||||    
T  973190 atgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataa 973127  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22780340 - 22780399
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatg 77  Q
    ||||||||||||| |||||||||  | ||||  ||||||| |||||||||||||||||||    
T  22780340 atgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatg 22780399  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 14138641 - 14138559
Alignment:
Q  1 attttgaatcaaagaatatgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    ||||| || |||| || |||||||| |||| |||||||||| |||||| ||||||| || || || ||||||||||| |||||    
T  14138641 attttcaaacaaaaaagatgaagattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaatt 14138559  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7113610 - 7113675
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    ||||| ||||||  |||||||||  ||||||  ||||||||| || ||||||||||||||||||||    
T  7113610 atgaaaatcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatgataatt 7113675  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 17736754 - 17736815
Alignment:
Q  22 agatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    ||||||||| |||| |||| |||||||  ||||||||| || |||||||||||||| |||||    
T  17736754 agatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggtaatt 17736815  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 42091793 - 42091852
Alignment:
Q  24 atcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    ||||||| || ||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataatt 42091852  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 32342675 - 32342614
Alignment:
Q  22 agatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    ||||| ||| |||||||||  |||||| ||||||| ||||||||||||||||||||||||||    
T  32342675 agatcgcatgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataatt 32342614  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 10775102 - 10775023
Alignment:
Q  12 aagaatatgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataattcattataa 91  Q
    ||||| ||||||||||||| |||||||||| ||| ||  || ||| ||||| | ||||||||||||||| || |||||||    
T  10775102 aagaaaatgaagatcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgatatttgattataa 10775023  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 42819696 - 42819635
Alignment:
Q  22 agatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    |||||| || ||||| ||||| |||||  |||||| ||||| ||||||||||||||||||||    
T  42819696 agatcatatgttgaaagaaaatgatgaataagttttatgttcttgagatgaaaatgataatt 42819635  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 52432736 - 52432667
Alignment:
Q  22 agatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataattcattataa 91  Q
    ||||||| | || ||||||  ||||||  |||||||||||| |||||||||||||| ||||| |||||||    
T  52432736 agatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataa 52432667  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15321120 - 15321060
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatga 78  Q
    |||||||| |||| |||||||||  | |||| ||| |||||||||||||||| ||||||||    
T  15321120 atgaagattacatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatga 15321060  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 6630386 - 6630435
Alignment:
Q  26 cacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaa 75  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||||| ||||    
T  6630386 cacatgttgaatgaaaaagatgaaaaagtttgatgttcttgagataaaaa 6630435  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 32166631 - 32166696
Alignment:
Q  18 atgaagatcacatattgaatgaaaaagatgacaaagtttaatgtttttgagatgaaaatgataatt 83  Q
    |||||||| |||| |||||| ||  ||||||  |||||| ||||| ||||||||||||||||||||    
T  32166631 atgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataatt 32166696  T

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