View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_low_22 (Length: 256)
Name: NF13838_low_22
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_low_22 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 32942813 - 32942855
Alignment:
| Q |
214 |
acatcaccaattttggatccaacaattttcaaaaactttttga |
256 |
Q |
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| T |
32942813 |
acatcaccaattttggatccaacaattttcaaaaactttttga |
32942855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 32942659 - 32942697
Alignment:
| Q |
60 |
ttgaattttcaaaacctgctgagaaagagggagtagtag |
98 |
Q |
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| T |
32942659 |
ttgaattttcaaaacctgctgagaaagagggagtagtag |
32942697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 11316768 - 11316807
Alignment:
| Q |
214 |
acatcaccaattttggatccaacaattttcaaaaactttt |
253 |
Q |
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| T |
11316768 |
acatcaccaattttggatccaacaattttcaaaaactttt |
11316807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 11316610 - 11316648
Alignment:
| Q |
60 |
ttgaattttcaaaacctgctgagaaagagggagtagtag |
98 |
Q |
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|||||||||||||||||||||||||| | |||||||||| |
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| T |
11316610 |
ttgaattttcaaaacctgctgagaaaaatggagtagtag |
11316648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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