View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13838_low_23 (Length: 256)
Name: NF13838_low_23
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 50269746 - 50269988
Alignment:
| Q |
5 |
caacatgtacttgttctcctcttatattctttccttagtttcccgtattcatctttatcatctttaacgtgtatgcatacatgtattcacgttcttccga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50269746 |
caacatgtacttgttctcctcttatattctttccttagtttcccgtattcatctttatcatctttaacgtgtatgcatacatgtattcacgttcttccga |
50269845 |
T |
|
| Q |
105 |
tttaaaggtttagcatgaaatgtcaccgtcgaattgatgcctatactctagggccattataatgaaggaagcaaattgatgataacggacc---atttta |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50269846 |
tttaaaggtctagcatgaaatgtcaccgtcgaattgatgcctatactctagggccattataatgaaggaagcaaattgatgataacggaccataatttta |
50269945 |
T |
|
| Q |
202 |
cttgtgttttttatgtggaaattgaagagaagaagaaaagtat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50269946 |
cttgtgttttttatgtggaaattgaagagaagaagaaaagtat |
50269988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University