View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13838_low_27 (Length: 236)

Name: NF13838_low_27
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13838_low_27
NF13838_low_27
[»] chr1 (18 HSPs)
chr1 (1-226)||(10993917-10994142)
chr1 (6-226)||(11005233-11005453)
chr1 (26-226)||(10901352-10901552)
chr1 (79-216)||(11032933-11033070)
chr1 (34-226)||(10979031-10979223)
chr1 (61-226)||(11010624-11010789)
chr1 (62-213)||(11007463-11007614)
chr1 (25-226)||(10932667-10932869)
chr1 (33-226)||(10914295-10914488)
chr1 (61-226)||(10903163-10903328)
chr1 (61-226)||(11028820-11028985)
chr1 (114-183)||(9348803-9348872)
chr1 (114-177)||(9234322-9234385)
chr1 (114-155)||(9255310-9255351)
chr1 (114-155)||(9318572-9318613)
chr1 (114-155)||(9319689-9319730)
chr1 (114-155)||(9350006-9350047)
chr1 (114-183)||(9384009-9384078)
[»] chr6 (1 HSPs)
chr6 (114-183)||(15927450-15927519)
[»] chr3 (1 HSPs)
chr3 (114-183)||(9159379-9159448)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 10994142 - 10993917
Alignment:
Q  1 tgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994142 tgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaa 10994043  T
Q  101 tccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994042 tccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttct 10993943  T
Q  201 ttgccaatttcatttcttcatctgtg 226  Q
    ||||||||||||||||||||||||||    
T  10993942 ttgccaatttcatttcttcatctgtg 10993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 11005453 - 11005233
Alignment:
Q  6 cagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatcccc 105  Q
    |||||||||||||||||   |||||| || ||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11005453 cagaggaagaccaagaacttctagtattaccatctctaaaatcctcagctggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatcccc 11005354  T
Q  106 atcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11005353 atcttcttcttcaagcatctcaatcactttatccattgaaggacgatcacctggttttgtctgtatacaccataaagccacaatcatcattttctttgcc 11005254  T
Q  206 aatttcatttcttcatctgtg 226  Q
    |||||||||||||||||||||    
T  11005253 aatttcatttcttcatctgtg 11005233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 10901352 - 10901552
Alignment:
Q  26 ctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatct 125  Q
    |||||| ||||||||| || ||| || ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  10901352 ctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcatct 10901451  T
Q  126 caatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10901452 caatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatctgt 10901551  T
Q  226 g 226  Q
    |    
T  10901552 g 10901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 11032933 - 11033070
Alignment:
Q  79 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccat 178  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||     
T  11032933 aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac 11033032  T
Q  179 aatgccacaatcatcattttctttgccaatttcatttc 216  Q
    || ||||| |||||||||||||||||||||||||||||    
T  11033033 aaagccactatcatcattttctttgccaatttcatttc 11033070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 10979031 - 10979223
Alignment:
Q  34 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 133  Q
    |||||||| |||||| ||| |||||  |||||||  | ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10979031 atcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 10979130  T
Q  134 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 226  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||    
T  10979131 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtg 10979223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 11010624 - 11010789
Alignment:
Q  61 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 160  Q
    |||||||||| ||| ||||||||||||||| || ||||| || ||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||    
T  11010624 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 11010723  T
Q  161 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 226  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| |  |||||||| | |||||||    
T  11010724 tttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtg 11010789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 11007463 - 11007614
Alignment:
Q  62 tcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggtt 161  Q
    ||||||| || ||||| ||||| ||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  11007463 tcttgtgcatcaaggtcaggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtt 11007562  T
Q  162 ttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcat 213  Q
    | |  ||||||||||| || ||||| ||||||||||||||||||||||||||    
T  11007563 tcgcttgaatacaccacaaagccactatcatcattttctttgccaatttcat 11007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 10932667 - 10932869
Alignment:
Q  25 gctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatc 124  Q
    |||| |||||| ||||| |||||| ||| |||||  |||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10932667 gctactactattatctccaacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatc 10932766  T
Q  125 t-caatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatct 223  Q
    | | |  ||||| |||||||||||||||||    || ||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| | ||||    
T  10932767 tcctaaaactttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatct 10932866  T
Q  224 gtg 226  Q
    |||    
T  10932867 gtg 10932869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 10914295 - 10914488
Alignment:
Q  33 tatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcac 132  Q
    ||||||||| ||||||  ||| ||||  |||||||||| |||  |||||||||||||| |||||||| || ||||||||||||||||||||||| |  ||    
T  10914295 tatcatctccaacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaac 10914394  T
Q  133 tttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 226  Q
    ||| |||||||||||||||||    |||||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||    
T  10914395 tttttccattgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtg 10914488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 10903163 - 10903328
Alignment:
Q  61 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 160  Q
    |||||||||| ||| ||||||||||||||| ||||| || ||||||||||||| |||||||||||| |  |||||||||||||||||||||||    |||    
T  10903163 atcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattgaaggacgatcctcgggt 10903262  T
Q  161 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 226  Q
    ||||| || |||||||| || |||||  |||||||||||||||||||||||||||| | |||||||    
T  10903263 tttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtg 10903328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 11028985 - 11028820
Alignment:
Q  61 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 160  Q
    |||||| ||| ||| ||||||||||||||| |||||||| || ||||||||||||||||||||||| |  |||||||||||||||||||||||    |||    
T  11028985 atcttgcggacaaaagtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggt 11028886  T
Q  161 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 226  Q
    ||||| || |||||||| || ||| || |||||||||||||||||||||||||||| | |||||||    
T  11028885 tttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtg 11028820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 9348872 - 9348803
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 183  Q
    |||| |||||||| || ||||||| ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9348872 cttcgagcatctctattactttattcattgcaggacgatcacttggttttaactgtatacaccataatgc 9348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 9234385 - 9234322
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacacca 177  Q
    |||||||||||||||  ||||| | |||||||||||||||||| |||||   ||||||||||||    
T  9234385 cttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacacca 9234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 9255351 - 9255310
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcac 155  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  9255351 cttcaagcatctctatcactttattcattgagggacgatcac 9255310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 9318613 - 9318572
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcac 155  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9318613 cttcaagcatctctatcactttgttcattgaaggacgatcac 9318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 9319689 - 9319730
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcac 155  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9319689 cttcaagcatctctatcactttgttcattgaaggacgatcac 9319730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 9350006 - 9350047
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcac 155  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9350006 cttcaagcatctctatcactttgttcattgaaggacgatcac 9350047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 9384009 - 9384078
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 183  Q
    |||||||||||||||  ||||| | ||||| |||||||||||| |||||   |||||||||||| |||||    
T  9384009 cttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgc 9384078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 15927519 - 15927450
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 183  Q
    ||||||||||||| |||||| | | |||||||||||||||||| ||||||   |||||||||||||||||    
T  15927519 cttcaagcatctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgc 15927450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 9159379 - 9159448
Alignment:
Q  114 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 183  Q
    |||| |||||||| || ||||| | ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9159379 cttcgagcatctctattactttgttcattgcaggacgatcacttggttttaactgtatacaccataatgc 9159448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University