View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13838_low_3 (Length: 522)

Name: NF13838_low_3
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13838_low_3
NF13838_low_3
[»] chr3 (14 HSPs)
chr3 (23-503)||(30227280-30227755)
chr3 (244-503)||(30214652-30214907)
chr3 (244-503)||(30201105-30201361)
chr3 (23-136)||(30216413-30216526)
chr3 (175-503)||(30223029-30223347)
chr3 (175-503)||(30230270-30230588)
chr3 (343-503)||(29856778-29856935)
chr3 (343-491)||(29648978-29649123)
chr3 (348-489)||(30238977-30239118)
chr3 (354-503)||(36309763-36309908)
chr3 (352-457)||(36333942-36334044)
chr3 (348-425)||(29751861-29751935)
chr3 (343-401)||(12570031-12570089)
chr3 (343-401)||(13546495-13546553)
[»] chr7 (2 HSPs)
chr7 (242-495)||(16644631-16644881)
chr7 (242-495)||(17618992-17619242)
[»] chr6 (2 HSPs)
chr6 (349-492)||(5569421-5569561)
chr6 (365-492)||(5574415-5574539)
[»] chr5 (2 HSPs)
chr5 (348-491)||(11634908-11635048)
chr5 (348-491)||(25784278-25784418)
[»] chr1 (2 HSPs)
chr1 (347-492)||(16955660-16955802)
chr1 (347-492)||(16966178-16966320)
[»] chr8 (2 HSPs)
chr8 (351-492)||(14934501-14934639)
chr8 (343-398)||(1152915-1152970)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 503
Target Start/End: Complemental strand, 30227755 - 30227280
Alignment:
Q  23 ttgattgcaatgcatgagttacaataggccaaaaaataaataagtaacaaggctttataagaaatcattcattattatatcaacacttattcaacagaac 122  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  30227755 ttgattgcaatgcatgagatacaataggccaaaaaattgataagtaacaagactttataagaaatcattcattactatagcaacacttattcaacagaac 30227656  T
Q  123 atcataaataaatgaatgagttcgtaattttgtaagacttgacagtccaagcgagcaaaaggaaaataatattaccagcttagctatggtctgaaggaga 222  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  30227655 atcataaataaatgaatgagttcgtaattttgtaagacttgaaattccaagcgagcaaaaggaaaacaatattaccagctaa-ctatggtctgaaggaga 30227557  T
Q  223 ttgttagtgnnnnnnnnnncaatctcaatgtcttccaagtgaccgcaacttcgttcaacatcataacgacaaatctctaccaaatccatagtattgtagg 322  Q
    |||| || |          ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30227556 ttgtcagggcaaaaagacacaatctcaatgtcttccaagtgaccgcaacttc-ttcaacatcataacgacaaatctctaccaaatccatagtattgtagg 30227458  T
Q  323 gataacggtcattgtctttgatgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcac 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||   |||||||||||||||    
T  30227457 gataacggtcattgtctttgatgtaaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttg---acatgcacttgtcac 30227361  T
Q  423 aatctcgatggtaccaagcctttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30227360 aatctcgatggtaccaagcctttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 30227280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 244 - 503
Target Start/End: Complemental strand, 30214907 - 30214652
Alignment:
Q  244 atctcaatgtcttccaagtgaccgcaacttcgttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtctttga 343  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||  ||| || | |    
T  30214907 atctcaatgtcttccaagtgaccgcaacttcgttcaacagcataacgacaaatctttaccaaatccatattattgtagggatgacggttgttgactctca 30214808  T
Q  344 tgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcct 443  Q
    ||||||| ||| |||| || ||||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||    
T  30214807 tgtaaatagtgtgccatataagaggatccttgcaaatgttccaccatagaggacacacttg---acatgcacttgtcacaatctcaatggtaccaagtct 30214711  T
Q  444 ttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 503  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30214710 ttgaa-aatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 30214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 244 - 503
Target Start/End: Complemental strand, 30201361 - 30201105
Alignment:
Q  244 atctcaatgtcttccaagtgaccgcaacttcgttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtctttga 343  Q
    ||||||||||||  ||||||||| |||||||| |||||| ||||||||||||||| ||||| ||| ||| |||||||||| |||| |||||||||| | |    
T  30201361 atctcaatgtctcgcaagtgaccacaacttcgatcaacagcataacgacaaatctttaccagatctatattattgtaggggtaactgtcattgtctatca 30201262  T
Q  344 tgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcct 443  Q
    | | ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||| || ||||||| ||||||    
T  30201261 tatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttg---acatgcacttgtcacaatttcaatggtactaagcct 30201165  T
Q  444 ttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 503  Q
    |||||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||    
T  30201164 ttgaagaatgttttctgtaatgtctttaggaagttcaagccaatttggccccattgtgct 30201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 30216526 - 30216413
Alignment:
Q  23 ttgattgcaatgcatgagttacaataggccaaaaaataaataagtaacaaggctttataagaaatcattcattattatatcaacacttattcaacagaac 122  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||| ||||  |||||||||| |||    
T  30216526 ttgattgcaatgcatgagatacaataggccaaaaattaaataagtaacaagactttgtaagaaataattcattattatagcaaccattattcaacaaaac 30216427  T
Q  123 atcataaataaatg 136  Q
    ||| ||||||||||    
T  30216426 atcctaaataaatg 30216413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 175 - 503
Target Start/End: Complemental strand, 30223347 - 30223029
Alignment:
Q  175 gagcaaaaggaaaataatattaccagcttagctatggtctgaaggagattgttagtgnnnnnnnnnncaatctcaatgtcttccaagtgaccgcaacttc 274  Q
    ||||||||||||||||||||||||| || |||||||   ||||||||||  | ||||          |||||||||||||||||||||||||||| |||     
T  30223347 gagcaaaaggaaaataatattaccaact-agctatgtagtgaaggagatcatcagtgcaaaaagacacaatctcaatgtcttccaagtgaccgcagcttt 30223249  T
Q  275 gttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtctttgatgtaaatggtgcgccacatgagaggatgctt 374  Q
    || ||||| ||||||||||||||| ||||||||||| |  |      ||  ||   |||||||   | |||| ||||||||||||||||||||||| |||    
T  30223248 gtccaacagcataacgacaaatctttaccaaatccacatca------ggggaagtttcattgttgctcatgtgaatggtgcgccacatgagaggatcctt 30223155  T
Q  375 gcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttgttgtgatgtctctagga 474  Q
    |||||||||||||||   ||||||||| |   | | |||  |  ||| ||| || |  | |||||||||||| |||||||||| ||||||||||||||||    
T  30223154 gcaaatgttccaccaataaggacacacat---tgcgtgccttcttcagaatttcaactggaccaagcctttggagaatgtttgatgtgatgtctctagga 30223058  T
Q  475 agttcaagccaatttggccccattgtgct 503  Q
    || ||||||||||||||||||||||||||    
T  30223057 agctcaagccaatttggccccattgtgct 30223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 175 - 503
Target Start/End: Complemental strand, 30230588 - 30230270
Alignment:
Q  175 gagcaaaaggaaaataatattaccagcttagctatggtctgaaggagattgttagtgnnnnnnnnnncaatctcaatgtcttccaagtgaccgcaacttc 274  Q
    ||||||||||||||||||||||||| || |||||||  |||||||||||  | ||||          ||||||||||||||||||| | |||||| |||     
T  30230588 gagcaaaaggaaaataatattaccaact-agctatgtactgaaggagatcatcagtgcaaaaagacacaatctcaatgtcttccaactcaccgcagcttt 30230490  T
Q  275 gttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtctttgatgtaaatggtgcgccacatgagaggatgctt 374  Q
    |||||||| ||||||||||||||| ||||||||||| |  |      ||  ||   |||||||   | |||| |||||||||||||||| |||||| |||    
T  30230489 gttcaacagcataacgacaaatctttaccaaatccacatca------ggggaagtttcattgttgatcatgtgaatggtgcgccacatgcgaggatcctt 30230396  T
Q  375 gcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttgttgtgatgtctctagga 474  Q
    ||||||| |||||||   ||||||||| |   | | |||| |||||| ||| ||||    |||||||||||| |||||||||| ||| ||||||||||||    
T  30230395 gcaaatgctccaccaataaggacacacat---tgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgtttgatgtaatgtctctagga 30230299  T
Q  475 agttcaagccaatttggccccattgtgct 503  Q
    || ||||||||||||||||||||||||||    
T  30230298 agctcaagccaatttggccccattgtgct 30230270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 343 - 503
Target Start/End: Complemental strand, 29856935 - 29856778
Alignment:
Q  343 atgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcc 442  Q
    |||| |||||| ||||||| ||||||||  || || |||| ||||||||||||||| ||||||   ||||||||| |||| || || || ||| ||||||    
T  29856935 atgtgaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttga---catgcacttttcacgatttcaattgtatcaagcc 29856839  T
Q  443 tttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 503  Q
    ||||||| ||||||| |||||| |||||  |||||||||||||||||||| ||||||||||    
T  29856838 tttgaaggatgtttgctgtgatttctctcagaagttcaagccaatttggcaccattgtgct 29856778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 491
Target Start/End: Complemental strand, 29649123 - 29648978
Alignment:
Q  343 atgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcc 442  Q
    |||| |||||| |||||||||||||||| ||| |||||||||||| |||||||||| ||| |    |||||| |||| ||||| || |  ||| |||  |    
T  29649123 atgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactag---gcatgcatttgttacaatttcaacagtatcaactc 29649027  T
Q  443 tttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttgg 491  Q
     |||||| |||||  ||||||||||||| ||||||||||||||||||||    
T  29649026 cttgaaggatgttaattgtgatgtctcttggaagttcaagccaatttgg 29648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 489
Target Start/End: Complemental strand, 30239118 - 30238977
Alignment:
Q  348 aatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttga 447  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||| ||| |    |||||||| || |  || ||  || ||  |||||||||     
T  30239118 aatgatgcgccacatgagaggatccttgcatatgttccaccatagaggacatactag---gcatgcactagtgatgatttcagtgatagaaagcctttgg 30239022  T
Q  448 agaatgtttgttg---tgatgtctctaggaagttcaagccaattt 489  Q
    |||||||||||||   |||||||||| ||||||||||||||||||    
T  30239021 agaatgtttgttgcgatgatgtctcttggaagttcaagccaattt 30238977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 503
Target Start/End: Original strand, 36309763 - 36309908
Alignment:
Q  354 gcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatg 453  Q
    ||||||||| ||||||| ||||||||||||||||||| | ||||||||| |    |||||||| |||||||| || |  | ||||||||| ||||| |||    
T  36309763 gcgccacattagaggatccttgcaaatgttccaccattgcggacacactcg----catgcactcgtcacaatttcaaacgcaccaagcctatgaaggatg 36309858  T
Q  454 tttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgct 503  Q
    |||| ||| |  ||| ||||||| ||||||||||| |||||  |||||||    
T  36309859 tttgctgtcaaatctataggaagatcaagccaattcggccctcttgtgct 36309908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 457
Target Start/End: Original strand, 36333942 - 36334044
Alignment:
Q  352 gtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaagaa 451  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||| |    || ||||| |||||||| || |  ||||||||||| ||||| |    
T  36333942 gtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcg---gcaagcactcgtcacaatttccaacgtaccaagcctctgaagga 36334038  T
Q  452 tgtttg 457  Q
    ||||||    
T  36334039 tgtttg 36334044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 29751935 - 29751861
Alignment:
Q  348 aatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaat 425  Q
    |||||| | |||||||||||||| |||||||| ||||||||| |||||||| ||   | ||| |||||||||||||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaac---attacgtgcacttgtcacaat 29751861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 12570089 - 12570031
Alignment:
Q  343 atgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacac 401  Q
    |||||||||||  ||||||||| ||| | ||||||||| |||||||| |||||||||||    
T  12570089 atgtaaatggtttgccacatgatagggttcttgcaaattttccaccaaagaggacacac 12570031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 13546553 - 13546495
Alignment:
Q  343 atgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacac 401  Q
    |||||||||||  ||||||||| ||| | ||||||||| |||||||| |||||||||||    
T  13546553 atgtaaatggtttgccacatgatagggttcttgcaaattttccaccaaagaggacacac 13546495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 495
Target Start/End: Original strand, 16644631 - 16644881
Alignment:
Q  242 caatctcaatgtcttccaagtgaccgcaacttcgttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtcttt 341  Q
    |||| ||||| |||| || |||||||||||||| || |||| ||||||||||||| | ||||||||||||| | ||| ||||| |||||||||||| |      
T  16644631 caatttcaatttctttcaggtgaccgcaacttcatttaacagcataacgacaaatatttaccaaatccatattgttgcagggacaacggtcattgtatcc 16644730  T
Q  342 gatgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagc 441  Q
     |||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| | |   |||||||||||||||| || |  | |  ||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactaggg---atgcacttgtcacaatttcaactgcattaagc 16644827  T
Q  442 ctttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggcccc 495  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||||    
T  16644828 ctttgaagaatgttttgtgtgatatctctaggaaggtcaagccaatttggcccc 16644881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 495
Target Start/End: Original strand, 17618992 - 17619242
Alignment:
Q  242 caatctcaatgtcttccaagtgaccgcaacttcgttcaacatcataacgacaaatctctaccaaatccatagtattgtagggataacggtcattgtcttt 341  Q
    |||| ||||| |||| || |||||||||||||| || |||| ||||||||||||| | ||||||||||||| | ||| ||||| |||||||||||| |      
T  17618992 caatttcaatttctttcaggtgaccgcaacttcatttaacagcataacgacaaatatttaccaaatccatattgttgcagggacaacggtcattgtatcc 17619091  T
Q  342 gatgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagc 441  Q
     |||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| | |   |||||||||||||||| || |  | |  ||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactaggg---atgcacttgtcacaatttcaactgcattaagc 17619188  T
Q  442 ctttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggcccc 495  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||||    
T  17619189 ctttgaagaatgttttgtgtgatatctctaggaaggtcaagccaatttggcccc 17619242  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 492
Target Start/End: Original strand, 5569421 - 5569561
Alignment:
Q  349 atggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaa 448  Q
    ||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||   |||||||||||| || |  || || ||| ||||||||||||    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttg---acatgcacttgttactacatcaatagtatcaagcctttgaa 5569517  T
Q  449 gaatgtttgttgtgatgtctctaggaagttcaagccaatttggc 492  Q
    | |||||    ||||||||||| |||||| ||||||||||||||    
T  5569518 ggatgttcaccgtgatgtctcttggaagtgcaagccaatttggc 5569561  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 365 - 492
Target Start/End: Original strand, 5574415 - 5574539
Alignment:
Q  365 gaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttgttgtgat 464  Q
    |||||| |||||||||||||||||||||||||||||||||   |||||||||||| || |  || || ||| ||||||||||||| |||||    |||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttg---acatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgat 5574511  T
Q  465 gtctctaggaagttcaagccaatttggc 492  Q
    |||||| |||||| ||||||||||||||    
T  5574512 gtctcttggaagtgcaagccaatttggc 5574539  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 491
Target Start/End: Complemental strand, 11635048 - 11634908
Alignment:
Q  348 aatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttga 447  Q
    |||||| |||||||||||||||| |||||| ||| |||||||||||||||| |||    |||||||| || | || || || |||||| |||||||  ||    
T  11635048 aatggtacgccacatgagaggatccttgcatatgctccaccatagaggacatacta---tacatgcattttttactatgtcaatggtatcaagcctccga 11634952  T
Q  448 agaatgtttgttgtgatgtctctaggaagttcaagccaatttgg 491  Q
    |||||||||||| |||||||| | ||||||||||||||||||||    
T  11634951 agaatgtttgttatgatgtctgtcggaagttcaagccaatttgg 11634908  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 491
Target Start/End: Original strand, 25784278 - 25784418
Alignment:
Q  348 aatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttga 447  Q
    ||||| ||||||||||| |||||  || || || |||||||||||||| ||||||||   |||| ||||||| || |  |||| ||||  ||||||| |     
T  25784278 aatggagcgccacatgaaaggatctttacatatattccaccatagagggcacacttg---acatacacttgtaactacgtcgaaggtattaagccttcgg 25784374  T
Q  448 agaatgtttgttgtgatgtctctaggaagttcaagccaatttgg 491  Q
    | |||||| ||||| |  ||||| ||||||||||||||||||||    
T  25784375 aaaatgttggttgtcacatctcttggaagttcaagccaatttgg 25784418  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 492
Target Start/End: Original strand, 16955660 - 16955802
Alignment:
Q  347 aaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttg 446  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||||||||   |||| ||||||| ||||| || || ||| ||||||| ||    
T  16955660 aaatagtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttg---acatacacttgtgacaatttcaatagtatcaagcctctg 16955756  T
Q  447 aagaatgtttgttgtgatgtctctaggaagttcaagccaatttggc 492  Q
     ||||||||| |||  |  ||| | || ||||||||||||||||||    
T  16955757 gagaatgtttattgccaaatcttttggtagttcaagccaatttggc 16955802  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 492
Target Start/End: Original strand, 16966178 - 16966320
Alignment:
Q  347 aaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttg 446  Q
    |||| ||| |||||||| |||||| ||||||||| |||||||||| ||||||||||||   |||| ||||||| || || || || ||| ||||||| ||    
T  16966178 aaatagtgtgccacatgtgaggatccttgcaaatattccaccataaaggacacacttg---acatacacttgtgactatttcaatagtatcaagcctctg 16966274  T
Q  447 aagaatgtttgttgtgatgtctctaggaagttcaagccaatttggc 492  Q
     ||||| ||| |||| |  ||||| || ||||||||||||||||||    
T  16966275 gagaatatttattgtcaaatctctgggtagttcaagccaatttggc 16966320  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 492
Target Start/End: Original strand, 14934501 - 14934639
Alignment:
Q  351 ggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggacacacttgagtacatgcacttgtcacaatctcgatggtaccaagcctttgaaga 450  Q
    |||| |||||||| |||||| |||| |||| |||||||| ||||| |||||||||   |||||||| | ||  || || |||| |||||||||||| |||    
T  14934501 ggtgtgccacatgtgaggatccttgaaaatattccaccaaagagggcacacttga---catgcactagccaatatttcaatggcaccaagcctttggaga 14934597  T
Q  451 atgtttgttgtgatgtctctaggaagttcaagccaatttggc 492  Q
    |||||||  || |  ||||| |||||||||||||||||||||    
T  14934598 atgtttgcagtcacatctcttggaagttcaagccaatttggc 14934639  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 1152915 - 1152970
Alignment:
Q  343 atgtaaatggtgcgccacatgagaggatgcttgcaaatgttccaccatagaggaca 398  Q
    |||| |||||| |||||||| ||||||| ||||||||||| |||||| ||||||||    
T  1152915 atgtgaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggaca 1152970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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