View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13838_low_30 (Length: 203)
Name: NF13838_low_30
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_low_30 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0044 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43099 - 43007
Alignment:
| Q |
1 |
aaatcacaacctcccaaatcaaccgcaatccctttcgaannnnnnnnnatgatgaggacctccactccatcactcccaatgaagaaaacccac |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43099 |
aaatcacaacctcccaaatcaaccgcaatccctttcgaatttttttttatgataaggacctccactccatcactcccaatgaagaaaacccac |
43007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38093045 - 38093081
Alignment:
| Q |
1 |
aaatcacaacctcccaaatcaaccgcaatccctttcg |
37 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38093045 |
aaatcacaacctcccaaatcaaccgcaacccctttcg |
38093081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 38093114 - 38093146
Alignment:
| Q |
55 |
aggacctccactccatcactcccaatgaagaaa |
87 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
38093114 |
aggacctccactccaacactcccaatgaagaaa |
38093146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University